PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0676.6.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 210aa    MW: 24151.5 Da    PI: 5.4571
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0676.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.15.8e-142962135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++C+tt+ p+WR+ p+g + +C  CGl+ rk+g+
  Kaladp0024s0676.6.p 29 CAHCNTTQAPMWRKTPSGAR-ICDFCGLRLRKRGM 62
                         ********************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011415.5122376IPR000679Zinc finger, GATA-type
SMARTSM004014.9E-102372IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.3E-142473IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.71E-112577No hitNo description
CDDcd002021.48E-102871No hitNo description
PfamPF003201.6E-102961IPR000679Zinc finger, GATA-type
PROSITE profilePS5152514.379128209IPR027353NET domain
PfamPF170351.6E-15138199IPR027353NET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MMILFQGYLE RPRKFRSMID ILSQNGQSCA HCNTTQAPMW RKTPSGARIC DFCGLRLRKR  60
GMQLSPQKKD QTITGSVQEA DNKDEEVTDD LKFLLGNDRL QVEQTMKKYA DEISASLGLL  120
EQQLEGFLDN VTSKCRSMTF FEKQSLWSLI KDLPPENFDR VVEIIKRSRG LDQRDENDIL  180
VDLEDTDNAV LWRLYYYAKA VENARNLVG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.19e-08GATA transcription factor 15