PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0730.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 160aa    MW: 17128.1 Da    PI: 9.79
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0730.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.45.3e-34101542129
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasecea 75 
                           g kdrh k+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWL+++a  +i el+++                +++s+s++  
  Kaladp0024s0730.1.p  10 SGDKDRHNKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGNDQPSKAVEWLIKAAADSIAELPSLtgpfpetarqlcdaklGFESSSAAAV 99 
                          578*************************************************************99999999999999884444433423 PP

                  TCP  76 esssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrek 129
                          +++  +++++++ + + s+  s+ s++s+ s l+l + + r ++r  ar r+ e+
  Kaladp0024s0730.1.p 100 AAEADASHTQQKMNVCMSKSASSTSETSKGSGLSLTRtDARVNQRVGARARSGES 154
                          3333333334445666666666777777777777777666655555555554443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3511157IPR005333Transcription factor, TCP
PROSITE profilePS5136928.0931270IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MPIFRVSRAS GDKDRHNKVL TSKGLRDRRV RLSVSTAIQF YDLQDRLGND QPSKAVEWLI  60
KAAADSIAEL PSLTGPFPET ARQLCDAKLG FESSSAAAVA AEADASHTQQ KMNVCMSKSA  120
SSTSETSKGS GLSLTRTDAR VNQRVGARAR SGESEREGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-241771155Putative transcription factor PCF6
5zkt_B3e-241771155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096599.16e-58transcription factor TCP2-like
RefseqXP_011096600.16e-58transcription factor TCP2-like
RefseqXP_020554008.16e-58transcription factor TCP2-like
SwissprotQ93V433e-41TCP2_ARATH; Transcription factor TCP2
TrEMBLF6HLT72e-54F6HLT7_VITVI; Uncharacterized protein
STRINGVIT_10s0003g03910.t013e-55(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.25e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]