PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0811.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 301aa    MW: 33713.5 Da    PI: 6.6864
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0811.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43e-35101012102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F++k+y+++ d++++ li w +++nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgFkkv+ ++         weF++++F +g+k
  Kaladp0024s0811.1.p  10 FIMKTYQMVTDPATDGLIAWGKSSNSFIVSNHLDFSQRILPAYFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEWFLRGQK 90 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i r+++
  Kaladp0024s0811.1.p  91 HLLKNIVRRRH 101
                          *******9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-51699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.58E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-36799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.3E-301099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-181033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-184860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDANSVIPPF IMKTYQMVTD PATDGLIAWG KSSNSFIVSN HLDFSQRILP AYFKHNNFSS  60
FVRQLNTYGF KKVDPDRWEF ANEWFLRGQK HLLKNIVRRR HGRNLSYAKD EEDEEEEDIL  120
LEISRLKEEQ KSLEQQVKDM NRRLQATERR PQQMLSFIHK VVEDPELLSR IMLEKEKTHH  180
ADKARRLIIT ASFSSSSSAA ATASTNSVKT EDDDEGGLGA NSSPETLCRP SPSLPAWWNQ  240
GSNGFGSVHQ GDGSGKPFAS AEDDGFGSVR VGYVSSGSGA DHVDGRSPPH YPFTLFRGGF  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-2619911120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596252.11e-109heat stress transcription factor C-1-like
SwissprotQ9LV522e-85HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2C9UB431e-107A0A2C9UB43_MANES; Uncharacterized protein
STRINGcassava4.1_010201m1e-108(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-79heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]