PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0849.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 1115aa    MW: 123417 Da    PI: 6.6808
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0849.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.61e-22163264199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F 
  Kaladp0024s0849.1.p 163 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLTGDSVLFI 250
                          99*****************************954.4444.48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++++l+++ +r+
  Kaladp0024s0849.1.p 251 --RDEKQQLLLGTRRA 264
                          ..55788889999886 PP
2Auxin_resp116.62.2e-38289372183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+aa+++s+F+v+YnPr+s+seFv++++k+ ka++  ++s+GmRf+m fete+s +rr++Gt++g+sd+dpv+W+nS+Wr+L+
  Kaladp0024s0849.1.p 289 AANAAANNSIFTVFYNPRTSPSEFVIPLAKYYKAVNsYQISLGMRFRMTFETEESGTRRYMGTITGISDVDPVNWKNSQWRNLQ 372
                          799********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-42154290IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-39154278IPR015300DNA-binding pseudobarrel domain
CDDcd100176.06E-20162254No hitNo description
SMARTSM010193.7E-22163265IPR003340B3 DNA binding domain
PfamPF023627.1E-21163264IPR003340B3 DNA binding domain
PROSITE profilePS5086311.787163265IPR003340B3 DNA binding domain
PfamPF065073.0E-34289372IPR010525Auxin response factor
PROSITE profilePS5174528.17510021087IPR000270PB1 domain
PfamPF023091.6E-710021087IPR033389AUX/IAA domain
SuperFamilySSF542773.07E-810141081No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1115 aa     Download sequence    Send to blast
MQPKSLHSDA ACLLLLVYVT RSFLLASYTK YEWLIHVVCH GNLLLEVMSL DANKTINPEL  60
WQACAGPLVN LPMAGTHVVY FPQGHSEQVA VSMKKDVDAQ YPNYSNLPPK LICLLHSVTL  120
LANPDTDEVY AQMVLQPVSS IDQEALIGSD HSLKSHKPQT EFFCKTLTAS DTSTHGGFSV  180
PRRAAEKIFP PLDFSMQPPA QEIVAKDLHD NVWTFRHIYR GQPKRHLLTT GWSLFVSGKR  240
LLTGDSVLFI RDEKQQLLLG TRRANRLPPN VSSSVISSDS MHIGILAAAA NAAANNSIFT  300
VFYNPRTSPS EFVIPLAKYY KAVNSYQISL GMRFRMTFET EESGTRRYMG TITGISDVDP  360
VNWKNSQWRN LQVGWDEENT GEKCHRVSIW DIEPVTAPYF ICPPPFIRFK RPRQIGMPDE  420
ESSDMENLFK RVMPWLHDNA FLKESRPIPG INFTQWMNMQ QNHLLTHSLQ SAYMPSIPGC  480
VLPSLAEADP SQHVGLSASH YPPQSNPQLG IQWPQQQLHQ LPKPSPLNPC STSHQHLPDL  540
TQQSQNSVSQ LPASSHYMLP QTQVKITDIL QKQLASQNAQ AQGSIPQISN QQQLLSTSHN  600
LGQLPEIVNQ PVTNNLIQLP MLQRGHQQEQ QYLHSQQSIT QHVGQIASFQ GQQRPTADVA  660
NNIYIPASIG SVQAVEMPQV MTSSTYPCTM DPTQQQCGNN TGLSTGCISS SPQQLRSVHQ  720
PLAVNISELP FPTGCHTSNV NQVSVDGTTI WTGAGQLLCA NGVPSCSTST LNEKFPNAIK  780
SVKGMIQKSY IQGPEDMTPP AFILPVTGAI ESASSSNSFV RCSENKSAVL TELCNGKKQN  840
AGVANNFMIV NSVQPQKNYL DTSYSSTSVS QFENNASLQQ NVNPASFSFQ PMMSQTAVGF  900
VDHRNNISFE MSSGQNITSL NQDPLLSQDI VSLGKNKSAS EDMLHDFEYA KDPQQELSSS  960
IVSQSFGVPD MTFNSIESTL SDNSFIAKPP FAPPPQPYQR LRTYTKVYKR GAVGRSIDIT  1020
AYSGYDDLKQ DLARRFGIEG QLEDRHKVRW KLVYVDHEND VLLVGDDPWE EFVSCVRSIK  1080
ILSPQEVQQM SLDGDVSNSV LLKQACSSSN GGIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1554439333388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876353.10.0auxin response factor 19-like
TrEMBLA0A2N9GCT50.0A0A2N9GCT5_FAGSY; Auxin response factor
TrEMBLA0A2N9HN130.0A0A2N9HN13_FAGSY; Auxin response factor
STRINGXP_010106948.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein