PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0856.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 241aa    MW: 26693.6 Da    PI: 6.6566
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0856.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-11626425
                         ---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                          lCr+++r G C+yG+rCkFaH
  Kaladp0024s0856.1.p  6 QLCRYYQR-GSCQYGARCKFAH 26
                         69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.356229IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7427IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9526IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-9629IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQPSKQLCRY YQRGSCQYGA RCKFAHEIEQ PSKANNSFGF GVQQNSGSVQ QQNNPFGFGP  60
FDNKWSRVSA NPGTGAAASP RKGDGQSPAA THSCTDPDSC KKQIAEDFEH ERPLWKLTCY  120
SHHKYAPCDI TGDVSYEELR MSAYDDAKSG MSLPAIVEKE RGLLNAKLVE FEALLRNPYK  180
GPSSSIATQS PFPQATPNAF MNNVASPSVT IYNTWGVYGF TENLVENEKE FFIWFGENWG  240
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473927.19e-76zinc finger CCCH domain-containing protein 16 isoform X4
RefseqXP_021689229.11e-75zinc finger CCCH domain-containing protein 16 isoform X1
RefseqXP_021689230.11e-75zinc finger CCCH domain-containing protein 16 isoform X2
RefseqXP_028060199.11e-75zinc finger CCCH domain-containing protein 46-like
SwissprotQ9FWS37e-65C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A061GRV65e-75A0A061GRV6_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 5
TrEMBLA0A061GSU76e-75A0A061GSU7_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 6 (Fragment)
STRINGXP_006473927.14e-75(Citrus sinensis)
STRINGEOY322127e-75(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.17e-65C3H family protein