PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0024s0857.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 949aa MW: 104799 Da PI: 4.51

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0024s0857.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.8e-09	799	841	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++ + el++++++q+G++ ++ I + ++ gRt+ q+k+++ k Kaladp0024s0857.1.p 799 ASWSKLDTELFYQGIRQFGTD-FTVIQQLFP-GRTRHQIKLKYKK 841 58*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.0E-27	791	875	No hit	No description
PROSITE profile	PS51293	9.462	796	844	IPR017884	SANT domain
Gene3D	G3DSA:1.10.10.60	1.1E-5	796	841	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-8	797	845	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.72E-10	800	847	IPR009057	Homeodomain-like
CDD	cd00167	6.82E-7	800	841	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence Send to blast
MDFDDLDPFD DFLEVRTDAN GEAAKKFKPK SKPRPKPRSA AHTSVASQPQ KEKLLVSVPS 60 LPQESSSDAT HMGVASAAKS VGLSDSLNNV EEQHSGISLV QQVPVSPEPV SPLPRHDDGC 120 SKDAFHEEQA ETRVDGSQTS LVEVCPSKGL GQVAKDYITS MDSEFDSFDD FLAAPTDSNG 180 AATKFKPKAK GRPKPRSSVV LSTSPHVSIE NALISTAAAV ETVQENAAEV AYLSPPRASN 240 SICVSDHLNK VNKPQIISQD VVTGGNGGLN CDYYEKPPVS GGDGCQNFGV KQCPSRAESA 300 SLKCNQFDDI DPEQSISTAR DGGEFRPKLK SRPVKQTLSS AKSGLTGTMN ENHVEISSDA 360 FDSNRQENLG GTDVSGNNNI PEGSLQDRVP LDDSRRFEME NSSSINVVLD DLQFDVTTIE 420 SFHPQSRSSP DKSLNSSRDV FMGDRIIESY QFDNGEIPCS IIMVDQGNPH SFVDQESNTC 480 DSSQAQSMFG VTGNQNEMSI RDSTTSMITK PSDIDSGRME PEHRESFDNG SLDDPSISGF 540 PLADDYFSIN EPFTCGSEIG QSGASLPDNG MHVEATHEIP VERVDDSAAP EGTGTRQPSR 600 VLRKRKARST RPAESVDCET DSIHGELHSE FDRNQDEDYN EGNTNQKKKG VQRSRKSVPE 660 SDQPNRSRKK VKDASSEQQE KPKKKFSHST RGRRKRVDPT LLATPDDEID HRSCSFRDLI 720 LRAEFLERDS KKVSTPSSVP ATNQRTESPS PWDQPYNERS NFDSDQHGEY DYYEDDNIEV 780 QESSSYFNYH SYMTKTPRAS WSKLDTELFY QGIRQFGTDF TVIQQLFPGR TRHQIKLKYK 840 KEERQHPQRV SEAIENRAKG ISYFQQVIEQ LKATDTQADQ ELGEDPNEVE DYADDVLEEN 900 AEPNENGSTR LELGDVVAKD DVEALDTAEV SEKMDEDDDY GLGSYVGL*

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence Send to blast

MDFDDLDPFD DFLEVRTDAN GEAAKKFKPK SKPRPKPRSA AHTSVASQPQ KEKLLVSVPS  60
LPQESSSDAT HMGVASAAKS VGLSDSLNNV EEQHSGISLV QQVPVSPEPV SPLPRHDDGC  120
SKDAFHEEQA ETRVDGSQTS LVEVCPSKGL GQVAKDYITS MDSEFDSFDD FLAAPTDSNG  180
AATKFKPKAK GRPKPRSSVV LSTSPHVSIE NALISTAAAV ETVQENAAEV AYLSPPRASN  240
SICVSDHLNK VNKPQIISQD VVTGGNGGLN CDYYEKPPVS GGDGCQNFGV KQCPSRAESA  300
SLKCNQFDDI DPEQSISTAR DGGEFRPKLK SRPVKQTLSS AKSGLTGTMN ENHVEISSDA  360
FDSNRQENLG GTDVSGNNNI PEGSLQDRVP LDDSRRFEME NSSSINVVLD DLQFDVTTIE  420
SFHPQSRSSP DKSLNSSRDV FMGDRIIESY QFDNGEIPCS IIMVDQGNPH SFVDQESNTC  480
DSSQAQSMFG VTGNQNEMSI RDSTTSMITK PSDIDSGRME PEHRESFDNG SLDDPSISGF  540
PLADDYFSIN EPFTCGSEIG QSGASLPDNG MHVEATHEIP VERVDDSAAP EGTGTRQPSR  600
VLRKRKARST RPAESVDCET DSIHGELHSE FDRNQDEDYN EGNTNQKKKG VQRSRKSVPE  660
SDQPNRSRKK VKDASSEQQE KPKKKFSHST RGRRKRVDPT LLATPDDEID HRSCSFRDLI  720
LRAEFLERDS KKVSTPSSVP ATNQRTESPS PWDQPYNERS NFDSDQHGEY DYYEDDNIEV  780
QESSSYFNYH SYMTKTPRAS WSKLDTELFY QGIRQFGTDF TVIQQLFPGR TRHQIKLKYK  840
KEERQHPQRV SEAIENRAKG ISYFQQVIEQ LKATDTQADQ ELGEDPNEVE DYADDVLEEN  900
AEPNENGSTR LELGDVVAKD DVEALDTAEV SEKMDEDDDY GLGSYVGL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-38	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kaladp0024s0857.1.p