PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0909.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 243aa    MW: 26382.9 Da    PI: 9.9578
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0909.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.4e-066183123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Kaladp0024s0909.1.p 61 FVCEICSKGFQRDQNLQLHRRGH 83
                         89*******************88 PP
2zf-C2H214.20.00013137159123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H + +
  Kaladp0024s0909.1.p 137 WKCEKCSKKYAVQSDWKAHAKIC 159
                          58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.15E-76083No hitNo description
Gene3DG3DSA:3.30.160.602.4E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0366183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8876183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355220102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.15E-7132157No hitNo description
SMARTSM00355140137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAASSASGGD ASVSSSGDQP VAAAPPLKAA VKKKRNLPGM PDPDAEVIAL SPKTLMATNR  60
FVCEICSKGF QRDQNLQLHR RGHNLPWKLK QRSSKDVKKR VYVCPESTCV HHDPSRALGD  120
LTGIKKHFCR KHGEKTWKCE KCSKKYAVQS DWKAHAKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARATETQA PKRNGKGSHP RDDPKNQNAA AAPGSPQPAP TTDDVLSGTG  240
RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36133196366Zinc finger protein JACKDAW
5b3h_F2e-36133196366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888880.11e-127protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-120IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A1Q3BNB21e-124A0A1Q3BNB2_CEPFO; Zf-C2H2_jaz domain-containing protein
STRINGevm.model.supercontig_158.11e-126(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-115indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]