PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0028s0022.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 296aa    MW: 33807.8 Da    PI: 10.495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0028s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.59e-1718107299
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fkv+     +  + + +p  f++++ g    ++++ l  ++grsW + + ++ +++r++ ++GWkeF++ n Lk+gDf+vF++ ++s+f 
  Kaladp0028s0022.1.p  18 FKVM--VGDFL-KKMLVPIAFVRRFHGT--FPQEVLLDCPTGRSWWIGV-VKDGPDRMYCQRGWKEFAQGNSLKVGDFLVFRYARNSKF- 100
                          5555..22333.34788********877..6779***************.688888999************************999999. PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                            v +++k
  Kaladp0028s0022.1.p 101 -DVEIYEK 107
                          .7777665 PP
2B346.95.1e-15192291496
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE.........EEETTE.....EEE-TTHHHHHHHHT--TT-EE CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.......rkksgr.....yvltkGWkeFvkangLkegDfv 80 
                          v ++++ +++g + +p +f++++ +    sk+l+l++ +s+++W v ++        r    +     +   + W +F+++n+L++g ++
  Kaladp0028s0022.1.p 192 VALSASGFNRGHVNVPASFCKKFPEL--HSKQLKLRTaSSSKVWAVSCKSylgrrkdR----KgsamqTRVHGAWARFARDNELRVGNVC 275
                          556778899999********999533..5678999996777*******6669975432....23434566679***************** PP

                          EEEE-SSSEE..EEEE CS
                   B3  81 vFkldgrsefelvvkv 96 
                          vF+l++r++ e v+kv
  Kaladp0028s0022.1.p 276 VFELVDRNSHEVVFKV 291
                          ***9988777676665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-2411110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-2212110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.14214108IPR003340B3 DNA binding domain
CDDcd100171.61E-1616105No hitNo description
PfamPF023621.1E-1417106IPR003340B3 DNA binding domain
SMARTSM010192.3E-1217108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17182295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-15183295IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-13188295No hitNo description
SMARTSM010194.4E-4189293IPR003340B3 DNA binding domain
PROSITE profilePS5086312.238189295IPR003340B3 DNA binding domain
PfamPF023623.1E-12190291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRPRPARLH NQNCESFFKV MVGDFLKKML VPIAFVRRFH GTFPQEVLLD CPTGRSWWIG  60
VVKDGPDRMY CQRGWKEFAQ GNSLKVGDFL VFRYARNSKF DVEIYEKSGC LKEVSAIFEE  120
PSDRPAMKTE DCSLDEITVV PAVHPFTPSP DNMSTQGRDT KDSQPRRRMQ RPDPVAREQA  180
NKFNSNRPFF GVALSASGFN RGHVNVPASF CKKFPELHSK QLKLRTASSS KVWAVSCKSY  240
LGRRKDRKGS AMQTRVHGAW ARFARDNELR VGNVCVFELV DRNSHEVVFK VHIFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-21B3 family protein