PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0028s0066.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 241aa    MW: 26706.7 Da    PI: 8.311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0028s0066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-20112162155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae Aa+a+++a+ +++g
  Kaladp0028s0066.1.p 112 KKYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFETAEAAARAYDRAAIEFRG 162
                          59********.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-22113171IPR016177DNA-binding domain
SMARTSM003807.5E-38113176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-32113171IPR001471AP2/ERF domain
PROSITE profilePS5103225.646113170IPR001471AP2/ERF domain
PfamPF008476.0E-14113162IPR001471AP2/ERF domain
PRINTSPR003676.1E-12114125IPR001471AP2/ERF domain
CDDcd000181.87E-18116170No hitNo description
PRINTSPR003676.1E-12136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MKKLNNNPDI KPFITNTSLP VSKDEELPSL KHVTAIDPPA LMTQNPHSAS SSWTSSEHDS  60
IISLTDIGAC RRCNFDGCLG CDYFPAEKQS IVIDKKRNNE DVGSKRKYRV KKKYRGVRQR  120
PWGKWAAEIR DPRRAARVWL GTFETAEAAA RAYDRAAIEF RGNRAKLNFP MADYGSSSTA  180
SGDVQMPTVG RGDGSSARSE QAFSKKDGEE EDEGSMEAEA SGRNSDERIW NNDVALDLTR  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-24112171464ATERF1
3gcc_A3e-24112171464ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890142.18e-46ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2P5ATD77e-47A0A2P5ATD7_PARAD; AP2/ERF transcription factor
STRINGXP_010026297.15e-45(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.13e-22redox responsive transcription factor 1