PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0028s0085.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ERF

Protein Properties

Length: 168aa MW: 17925.8 Da PI: 10.0837

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0028s0085.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.8	8.7e-16	28	76	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr +k +g+WvAeIr+p++ r r++lg++ ta Aa+a++ a l+g Kaladp0028s0085.1.p 28 YNGVRMRK-WGKWVAEIREPRK---RSRIWLGTYKTAVAAARAHDVALFHLRG 76 78*999.******954...5********************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	21.957	27	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.0E-29	27	85	IPR001471	AP2/ERF domain
SMART	SM00380	5.6E-34	27	90	IPR001471	AP2/ERF domain
CDD	cd00018	1.14E-24	28	86	No hit	No description
Pfam	PF00847	3.0E-10	28	76	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-20	28	85	IPR016177	DNA-binding domain
PRINTS	PR00367	6.0E-9	28	39	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.0E-9	50	66	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MEDNRSGGGR GSSQSRAVFG AGRAGREYNG VRMRKWGKWV AEIREPRKRS RIWLGTYKTA 60 VAAARAHDVA LFHLRGRSEK LNFPEHFVGR VSVEMSAEEI RRMATAVGAE VDAAELGMRR 120 RKAADEPSRS GGAESGEGEG GGVGSARPDL NQLPDLDGSD GDVSGGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-14	27	87	14	75	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263467.1	2e-41	PREDICTED: ethylene-responsive transcription factor ERF008-like
Swissprot	O22174	8e-36	ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBL	A0A1U8A9R8	5e-40	A0A1U8A9R8_NELNU; ethylene-responsive transcription factor ERF008-like
STRING	XP_010263467.1	8e-41	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50260.1	1e-29	cooperatively regulated by ethylene and jasmonate 1

Link Out ? help Back to Top
Phytozome	Kaladp0028s0085.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sazegari S,Niazi A,Ahmadi FS A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes. Bioinformation, 2015. 11(2): p. 101-6 [PMID:25848171]