PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0029s0094.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 195aa MW: 21876.2 Da PI: 10.5746

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0029s0094.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.1e-05	72	92	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H Kaladp0029s0094.1.p 72 CEVCNKGFQRDQNLQLHRRGH 92 *******************88 PP
2	zf-C2H2	12.7	0.00037	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + ks+ k H + + Kaladp0029s0094.1.p 147 WKCDKCSKKYAVKSDWKAHSKIC 169 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.47E-8	69	92	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.3E-6	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.13	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	70	92	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	112	142	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.4E-5	135	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.47E-8	142	167	No hit	No description
SMART	SM00355	130	147	167	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MSQGLSPVPS SILGFVGDQS KNPDSSNSPA TQPSASSSTL KRKRSLPGTP DPDSEVIALS 60 PTSLMATNRF LCEVCNKGFQ RDQNLQLHRR GHNLPWKLKQ RSNKEVVKKK VYICPEKSCV 120 HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVKS DWKAHSKICG KERNDTECML 180 RLCLAKKQFS RKEK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028077620.1	2e-92	zinc finger protein BALDIBIS-like
Swissprot	Q944L3	7e-86	IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBL	A0A1S3Y4A7	5e-91	A0A1S3Y4A7_TOBAC; protein indeterminate-domain 9-like
TrEMBL	A0A1U7W1Z7	5e-91	A0A1U7W1Z7_NICSY; zinc finger protein JACKDAW-like
STRING	XP_009771226.1	9e-92	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	3e-76	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Kaladp0029s0094.1.p

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]