PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0029s0096.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WOX

Protein Properties

Length: 135aa MW: 14960.9 Da PI: 8.9143

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0029s0096.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54	2.8e-17	14	75	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+++t eq++ Leel++ +p+a ++ ++ ++l +++ ++V++WFqN++a++k+ Kaladp0029s0096.1.p 14 RAPRWCPTGEQVTLLEELYKGgLTNPTAGQIHQIVTHLsrfgKVQGKNVFYWFQNHKARDKQ 75 679***************99************************************97 PP
2	Wus_type_Homeobox	104.2	8.4e-34	15	76	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +RW+Pt eQ+++Leelyk Gl +P++ +i++i ++L+++Gk+++kNVfyWFQN+kaR++q+ Kaladp0029s0096.1.p 15 APRWCPTGEQVTLLEELYKGGLTNPTAGQIHQIVTHLSRFGKVQGKNVFYWFQNHKARDKQR 76 58***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.264	11	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.82E-11	13	79	IPR009057	Homeodomain-like
SMART	SM00389	0.0023	13	80	IPR001356	Homeobox domain
Pfam	PF00046	6.3E-15	14	75	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.1E-6	16	75	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MCPAVGTSGA GCARAPRWCP TGEQVTLLEE LYKGGLTNPT AGQIHQIVTH LSRFGKVQGK 60 NVFYWFQNHK ARDKQRARKT LAGSEKQTAE LWMSRCSPNT HFICKNEMAF QRCNSSSSVS 120 PFSNDEVNYD CTLN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021856279.1	6e-29	WUSCHEL-related homeobox 3-like
Refseq	XP_022006821.1	7e-30	putative WUSCHEL-related homeobox 2
TrEMBL	A0A0K9R264	1e-27	A0A0K9R264_SPIOL; Uncharacterized protein
TrEMBL	A0A2U1PLT1	1e-27	A0A2U1PLT1_ARTAN; Homeodomain-containing protein
STRING	ERM95646	1e-27	(Amborella trichopoda)
STRING	cassava4.1_030827m	9e-28	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	4e-29	WOX family protein

Link Out ? help Back to Top
Phytozome	Kaladp0029s0096.1.p