PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0030s0005.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 292aa    MW: 32124.1 Da    PI: 4.9734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0030s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.6e-07162206655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +++ r+RR++i ++ +eL +l+P         +++ ae+ + A  Y+k+Lq
  Kaladp0030s0005.1.p 162 SIAARQRRRKIADKTQELGKLIPGgH------RMNTAEMFQSASMYVKYLQ 206
                          6788*******************955......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.42156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-6159210No hitNo description
SuperFamilySSF474591.57E-9160217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-9160215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-4162206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-6162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGLSYLSNYS TADYVLQQSL ELPQDLLELV SFQDEFTLAD TSIDPLFHPL PQKQPNFVSR  60
PQLLTTQYDT PYLHSCKRRK QIPSQQTDAH FSYDSMLASG APFFDGSGSA EALHLAQEFQ  120
ADGQSWVDYV PFSPDVFASG TTTYDGPGGH MCGGGGGLSA QSIAARQRRR KIADKTQELG  180
KLIPGGHRMN TAEMFQSASM YVKYLQAQIA MLTLTNSIQE EAGSSECFER ERDIILQVLA  240
ASPVVQEKLY SQETCLVPRK LIQSLSSDSE LQSRKPPVIK QINSLLAAQA E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-24bHLH family protein