PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0030s0084.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 489aa    MW: 53274.8 Da    PI: 8.5435
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0030s0084.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-0578100123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Kaladp0030s0084.1.p  78 FVCEICHKGFQRDQNLQLHRRGH 100
                          89*******************88 PP
2zf-C2H215.74.4e-05154176123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H++t+
  Kaladp0030s0084.1.p 154 WKCDKCSKKYAVQSDWKAHQKTC 176
                          58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.9E-777100No hitNo description
Gene3DG3DSA:3.30.160.607.3E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.04678100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63778100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355100119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-5142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.9E-7149175No hitNo description
SMARTSM0035594154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSNLTGDAVS VTSAADSGEE DDMHPQSQIK VVSAAASNRN GSLQLPPVKK RRNLPGTPDP  60
AAEVVALSPT TLMATNRFVC EICHKGFQRD QNLQLHRRGH NLPWKLRQRS SAEVKKRVYI  120
CPEPSCVHHN PARALGDLTG IKKHFSRKHG EKKWKCDKCS KKYAVQSDWK AHQKTCGTRE  180
YKCDCGTIFS RRDSFITHRA FCDALAEENS KVNQEQQEMG MAVNGSDPNL QTHVLELKSS  240
SVPDFGSFDP KNPLKSIPQK LVPTPFKPTM NPNAGGFSAR PGTLFSSPPS SLQLGSNSST  300
RFNSYVQDTN HYGGSMPNAY SSATALLQKA AQMGATASNN TINSPMMQQS YNVSSMAGAD  360
QVPRQPQPDY VPMFENHQPR QQMLGGGCRT NQQMLEAAAD ESSTAMNEQM SMFSRVFMNG  420
GDQGHNISSL FEGLEQVDSV SGTSGANKVQ PGLSMTAFGS VGDLIPTVDF LGVGGSRPCD  480
LHRQEERF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34150213366Zinc finger protein JACKDAW
5b3h_F2e-34150213366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028085273.11e-175zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9SCQ61e-111IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
SwissprotQ9ZWA61e-110IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A1U8NUW41e-167A0A1U8NUW4_GOSHI; protein indeterminate-domain 2-like
STRINGXP_007163083.11e-164(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-103C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]