PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0030s0110.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 198aa    MW: 22057.6 Da    PI: 10.6501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0030s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.8e-1339811155
                  AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +rg+++AeIrd + ng   r++lg+f+tae Aa a+++a+++ +g
  Kaladp0030s0110.1.p 39 QRGKFAAEIRDSTRNG--VRVWLGTFDTAESAALAYDQAALARRG 81
                         58*********44465..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.1222889IPR001471AP2/ERF domain
CDDcd000181.34E-203788No hitNo description
SMARTSM003808.8E-213795IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-163790IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-223890IPR001471AP2/ERF domain
PfamPF008471.3E-74081IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSSVSIFGPR SDRFVSIFIP QFKLPLLPTH GLSVALVRQR GKFAAEIRDS TRNGVRVWLG  60
TFDTAESAAL AYDQAALARR GAMALLNFSE EVVRGSLREL RCTVEENGSP VLALKKKHSK  120
KLINKVFVAR TKELQDILPS IINRPDNLDN LRLLAEQFRK RAPGMNQYQK KMMTKKLDPN  180
LVEGETFEAA ATEEAKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-183795969ATERF1
3gcc_A1e-183795969ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A161Y3J08e-33A0A161Y3J0_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-15ethylene response factor 1