PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0031s0041.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 574aa    MW: 62929.7 Da    PI: 6.3688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0031s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30327385259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+ kg+++pr+YYrCt+a gC+v+k+v+r+aed +++++tYeg+Hnh+
  Kaladp0031s0041.1.p 327 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCTVRKQVQRCAEDRTILITTYEGNHNHP 385
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-33311387IPR003657WRKY domain
SuperFamilySSF1182901.83E-27319387IPR003657WRKY domain
PROSITE profilePS5081129.643321387IPR003657WRKY domain
SMARTSM007746.8E-36326386IPR003657WRKY domain
PfamPF031065.0E-26328385IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MDNTTTTATT LNNTTTTRPP SNPSPSIHFP LNLNHMNQQH DDHVDLRLNS NNDHRHQHRV  60
IDEMDFFADD RTNKDGSHKQ QACTDIDHQN MTTPPADHQS THFNYVNTGL HLLTANTSTT  120
DQSMVDDGSS PATDDTRAKN EIVMLRAEIE RVDRENQELK EMLSHVTKSY STMQVHLMTL  180
MEESQKKDAH AQQQLHVKHR QEDKQQIEVG TSRLVQKQLV VDLGLVPASD IHDQQSLSSS  240
ENNEDGRSNS PPTNSEVASR LQMEEEAEIT RREISMGMGR EEEAVHVSPN KVPRFNPSKT  300
NNADQAEATM RKARVSVRAR SEATMITDGC QWRKYGQKMA KGNPCPRAYY RCTMAAGCTV  360
RKQVQRCAED RTILITTYEG NHNHPLPPAA MAMASTTSSA AHMLLSGSMS STDGLMNPNF  420
LARTLLPCSS NMATISASAP FPTVTLDLTQ DPNAATQPPP NTIQSQFQNP SQNLALLPQL  480
FTQTLYNQSM FSGLQMSQHR DSSLGPKQQG PLADSVTAAA IAADPNFTAV IAAAISSMIG  540
NSHPINNITT NSSNSNGNNS GANIVSSSGI PEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-21317387877Probable WRKY transcription factor 4
2lex_A3e-21317387877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022771770.10.0probable WRKY transcription factor 31
TrEMBLA0A438IL691e-178A0A438IL69_VITVI; WRKY transcription factor 6
STRINGVIT_12s0059g00880.t011e-179(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-115WRKY family protein