PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0031s0093.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 721aa    MW: 78225.9 Da    PI: 6.5373
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0031s0093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-10271327155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Kaladp0031s0093.1.p 271 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 327
                          57*******************4444.2455535555.7799999*************98 PP
2AP246.68.3e-15370421155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Kaladp0031s0093.1.p 370 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 421
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-14271337IPR016177DNA-binding domain
PfamPF008473.7E-8271327IPR001471AP2/ERF domain
CDDcd000183.26E-18271337No hitNo description
Gene3DG3DSA:3.30.730.103.7E-11272336IPR001471AP2/ERF domain
PROSITE profilePS5103217.016272335IPR001471AP2/ERF domain
SMARTSM003805.3E-22272341IPR001471AP2/ERF domain
PRINTSPR003676.0E-6273284IPR001471AP2/ERF domain
CDDcd000182.27E-24370429No hitNo description
SuperFamilySSF541711.37E-17370430IPR016177DNA-binding domain
PfamPF008471.0E-9370421IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-18371429IPR001471AP2/ERF domain
SMARTSM003802.8E-33371435IPR001471AP2/ERF domain
PROSITE profilePS5103219.045371429IPR001471AP2/ERF domain
PRINTSPR003676.0E-6411431IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MSAATDECFD LSSSSARPQP PHPFGVLDEA SAGFSDRNNS NTTNQQTHDW NSAENGCYKT  60
TTSEMSTLMG SSCNNNSNNG SQSLQDQHLP KLENFLGSHS FSNNHYHHHS TAAGDYMFST  120
ESMPETAAHN NNNNQAFNSN NNSIGLSMIK TWLRSNQAAG TGQMQQPLQQ QIPNSNEIFN  180
NNMSSGDGDS GREALCGVDN NNTSNKALTG AQTLSLSMST GSQSNSSAPL PLLDGGDGVD  240
MQQKTALDSQ TGAVVEAVPR KSLDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQT  300
RKGRQGGYDK EDKAARAYDL AALKYWGTTT TTNFPISSYE KELEEMKHMT RQEYVASLRR  360
KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  420
GLNAVTNFDM NRYDVNSILE SSTLPIGGAA KRLKDAEQAI ELTGAMEGLI SQRSALNHDS  480
VGSHLSDGMS YGSSGQWPTI AFHHPPYNNA MHQHYSPYAR VWCKQEQDST SEGTTHQSFQ  540
DFHQLQLGSS GATHNFLQQP TTSVLHNLMS LDSASMEHSS GSNSVIYGNG ESNGTGYGAG  600
GGYGASVNNN GGFVMPVGSA LMGNEDNNSE VKASGYATEN IYGNTNAYNQ ARTLYYLQQQ  660
QQQSLFKGGG YDQDSGCNSW VPTGIPCSGP KGTGGNTNNT AATCHVAGNQ PFTVWNETWK  720
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872279.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-134BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2C9USA60.0A0A2C9USA6_MANES; Uncharacterized protein
STRINGcassava4.1_002713m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-127AP2 family protein