PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0031s0167.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 292aa MW: 32864.6 Da PI: 7.5355

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0031s0167.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.8	1.1e-14	24	105	9	96
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++s+rl +p kf +++g +++ + l + g++W+v l k ++ ++ +GW +Fvk+ ++ gD++vF+++g+ f v + Kaladp0031s0167.1.p 24 PNSSSDRLEIPHKFHQHIGVR--TNVWVLLSGRGGKVWRVGL--LKLHDTLIFNEGWAGFVKDSFVEIGDILVFEYSGDWLF--EVYI 105 5678899*****9766644..678999999******..9*****************************997555..5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-21	14	111	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-22	15	111	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.81E-16	16	106	No hit	No description
PROSITE profile	PS50863	12.83	16	109	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-10	18	109	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.1E-12	23	105	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.8E-5	225	277	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	6.611	226	291	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MATGAPSALK SVGRKPHFIA TFVPNSSSDR LEIPHKFHQH IGVRTNVWVL LSGRGGKVWR 60 VGLLKLHDTL IFNEGWAGFV KDSFVEIGDI LVFEYSGDWL FEVYIFGENG CEKEVRDCLG 120 KLGPSLQKKR VRDGDTSSGR VVKKTGSDAC ISNVDCMNHE QEDFVATPCQ LGAPVTEPLA 180 LIIYREPWIE AEAQEIKYKQ TSQRLNSDPK WSKSSLYIFN HTLVLFITKM QKYNVDFRRV 240 LNIPMQFIRE NSLSYLTDEK MVLRTETGSS WSVNIVANTV DINYAEGGLL L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06220.1	2e-16	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0031s0167.1.p