PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0031s0169.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 284aa    MW: 31786.2 Da    PI: 7.9374
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0031s0169.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-16797197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                         ffk+  p d+++  ++ +p +f+ + + + ++ ++  l  + g++W+v +   ++++ +++t+GWk Fvk+ng+  g f++F++ g ++f  
  Kaladp0031s0169.1.p  7 FFKIYFPDDSSE--IMKMPEEFVGHLKADYKGCRQAYLVGPGGEEWRVGF--ARCGNDCFFTDGWKTFVKDNGVAYGHFLLFRYRGGMRF-- 92
                         677776655554..589******666666668889***************..********************************998999.. PP

                         EEEEE CS
                   B3 93 vvkvf 97
                         +v +f
  Kaladp0031s0169.1.p 93 KVNIF 97
                         88777 PP
2B349.11.1e-151992801698
                          EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          l + k+f++e+  + k++++ l+l++++g  W++++  + +   ++l +GW +F ++n+++ gD++vF+  ++s+ el+v+vf 
  Kaladp0031s0169.1.p 199 LHILKSFFSENsVICKPSDRHLVLRTRHGGCWSLTI--NHGTYVHTLCDGWASFLRDNNVENGDVCVFEIADSSKLELLVHVFH 280
                          58999******9555678889***************..88888899***********************8877*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.82E-16597No hitNo description
PROSITE profilePS5086313.0145100IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-205100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-205100IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-127100IPR003340B3 DNA binding domain
PfamPF023628.1E-14797IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-14179279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-13184280IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.646184282IPR003340B3 DNA binding domain
SMARTSM010199.0E-5191282IPR003340B3 DNA binding domain
CDDcd100171.58E-7199279No hitNo description
PfamPF023621.3E-12199280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDLLPVFFKI YFPDDSSEIM KMPEEFVGHL KADYKGCRQA YLVGPGGEEW RVGFARCGND  60
CFFTDGWKTF VKDNGVAYGH FLLFRYRGGM RFKVNIFTPS GLESEAAFTA KCTQGWKNNG  120
AEKGQSSNNG GQVLPACCLV KPSADEGTSR RPGKRPKGES HSISFMMSAA EQRVADVFSS  180
VHPFIIRQMN FERSQMPVLH ILKSFFSENS VICKPSDRHL VLRTRHGGCW SLTINHGTYV  240
HTLCDGWASF LRDNNVENGD VCVFEIADSS KLELLVHVFH SPF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-14B3 family protein