PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0032s0111.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 256aa    MW: 29190 Da    PI: 9.0343
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0032s0111.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.54.5e-2361146287
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                          fYn+Y+ + GF +r++ + ks++n+e+++ +fvC+k+g+r+ ++k+   k  +++ +tr+gC ak+k++++ + +w v+k++  HnH
  Kaladp0032s0111.1.p  61 FYNDYSLNHGFGIRIHGHIKSRTNQEVIRWQFVCNKQGHRNLKDKRqLGKDVKPHRQTRVGCMAKMKITLR-NCEWIVDKFDDIHNH 146
                          ****************************************9988875678899******************.9************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.5E-2161146IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDHIEKGVDQ LAPNDTSNKY EKGGDEANCE NSDVNILSHI EPMNSSIIGK VFASKDDAYT  60
FYNDYSLNHG FGIRIHGHIK SRTNQEVIRW QFVCNKQGHR NLKDKRQLGK DVKPHRQTRV  120
GCMAKMKITL RNCEWIVDKF DDIHNHVPTT PSKVMKHQSH NKFHQTSIVK NLVYELNKKG  180
MKPSTITRVV NAISCSEEVE ITSKQCSDML RAERKNHVGR ECHGIVRHFH EKSQSDGSHY  240
FAMDLASDGS LKSVF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-21FAR1-related sequence 5