PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0032s0389.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 196aa MW: 21190.1 Da PI: 6.8755

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0032s0389.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.4	2.4e-38	15	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+++Cv+apyf ++q +++fa++hk+FGasn +k+l ++p+++r da+ s++yeA ar+rdPvyG+v+ i++lqqq+ + Kaladp0032s0389.1.p 15 PCGACKFLRRKCVSGCVFAPYFQSDQgAAHFAAIHKVFGASNASKMLLSIPPQHRLDAVVSMCYEALARVRDPVYGCVAQIFALQQQVLN 104 7*********************9989********************************************************** PP DUF260 90 lkaelallkee 100 l+ae+a ++++ Kaladp0032s0389.1.p 105 LQAEVACTQAK 115 ****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.772	14	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-37	15	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MSSNWGGGSN TIIGPCGACK FLRRKCVSGC VFAPYFQSDQ GAAHFAAIHK VFGASNASKM 60 LLSIPPQHRL DAVVSMCYEA LARVRDPVYG CVAQIFALQQ QVLNLQAEVA CTQAKLATLR 120 PPQQPYPSDQ SLSGFPSMRC EDALQMQSWS PAELVDQGEV DDGDQEVELQ SLARQLMSRH 180 FSSSGFTFRP PTSSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-35	14	116	10	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-35	14	116	10	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090856.2	1e-67	LOB domain-containing protein 19
Swissprot	O81322	4e-53	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A4D8XZW0	1e-68	A0A4D8XZW0_SALSN; Uncharacterized protein
STRING	cassava4.1_030486m	5e-64	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	2e-55	LOB domain-containing protein 31

Link Out ? help Back to Top
Phytozome	Kaladp0032s0389.1.p