PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0032s0456.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 784aa MW: 90230.3 Da PI: 8.6135

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0032s0456.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.7	1.4e-21	113	207	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY+eYA+++GF++rk++skk +r++++ + ++C+++g++ +++ + ++ r+ra+trtgC+a+++ k+ +++ ++v+++ +eH Kaladp0032s0456.1.p 113 SFYKEYARQCGFQIRKATSKKASRSEKVNLQYMYCNRQGFNISKHYDslageSSAGFRRRASTRTGCRARVVFKNVTNSAYVVKEFIEEH 202 5***************************************9999999988888889**************************** PP FAR1 86 nHela 90 nH+l+ Kaladp0032s0456.1.p 203 NHQLT 207 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-19	113	207	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.5E-27	309	402	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.113	592	628	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.4E-5	598	620	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MSSVRSSSES SEVHQLFIFH SRTKIRVAGA QNGYNESNHS DANSDVLANE AQVVSDNDFS 60 SRHSDGLDTQ HSSRNGLSVY IDEDGAQRWV PDCDSSLKPN VGRLFDTLEY AISFYKEYAR 120 QCGFQIRKAT SKKASRSEKV NLQYMYCNRQ GFNISKHYDS LAGESSAGFR RRASTRTGCR 180 ARVVFKNVTN SAYVVKEFIE EHNHQLTALE YHQFLKSNRS LNYAQILKEL SGGYSHIGAQ 240 VVDVKNFRRD FKNFVGTSDA QLIIHKFQNN KVVRPEFAFE FCVGENGALE RLFWADSTSK 300 SNYDAFGDCV VFDVTYRTNK YKLVFIPFTG VDNHKRCVTF AAGLLLKEDV ESYSWLLDVF 360 RKLMGNGPRI WVTDQDPAMK ITITRVFPQS IHRLCMWHIT KKFTEKIGSV LCSEKEFLDK 420 IDGIVWNRYY EPDEFKVAWK QLIDEYGLQG NKWLADMYDM RRNWIPAFFR DVQMGGLLRT 480 TSRSESENSF FNCFLHSGMN LVEFFFAFET VMDAQRHNKH LLDHDSTNTF PIYRTSLPIE 540 KHAATVFTHS IFYDVQREIY AACVLCDVCT ISESEGVKTY DIKDKTTMNR TFTVIHNVLT 600 NNAECSCKNF QRIGIICRHI FLALKTEDVV CIPKHFIMTR WTKDAVHQKT CNPSLSDQGS 660 GDLKSDLNEL WMEFNGLIKC VGCDNQLIKD LLDFIRNFKS QKLPETTHMS KTDLFEKLIG 720 SPRPSEIVVQ PPQQAKNKGS GKRLKSDREK ITEQAKRHPR KCRVCNRMVN HDNRNCPDKK 780 NKC*

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MSSVRSSSES SEVHQLFIFH SRTKIRVAGA QNGYNESNHS DANSDVLANE AQVVSDNDFS  60
SRHSDGLDTQ HSSRNGLSVY IDEDGAQRWV PDCDSSLKPN VGRLFDTLEY AISFYKEYAR  120
QCGFQIRKAT SKKASRSEKV NLQYMYCNRQ GFNISKHYDS LAGESSAGFR RRASTRTGCR  180
ARVVFKNVTN SAYVVKEFIE EHNHQLTALE YHQFLKSNRS LNYAQILKEL SGGYSHIGAQ  240
VVDVKNFRRD FKNFVGTSDA QLIIHKFQNN KVVRPEFAFE FCVGENGALE RLFWADSTSK  300
SNYDAFGDCV VFDVTYRTNK YKLVFIPFTG VDNHKRCVTF AAGLLLKEDV ESYSWLLDVF  360
RKLMGNGPRI WVTDQDPAMK ITITRVFPQS IHRLCMWHIT KKFTEKIGSV LCSEKEFLDK  420
IDGIVWNRYY EPDEFKVAWK QLIDEYGLQG NKWLADMYDM RRNWIPAFFR DVQMGGLLRT  480
TSRSESENSF FNCFLHSGMN LVEFFFAFET VMDAQRHNKH LLDHDSTNTF PIYRTSLPIE  540
KHAATVFTHS IFYDVQREIY AACVLCDVCT ISESEGVKTY DIKDKTTMNR TFTVIHNVLT  600
NNAECSCKNF QRIGIICRHI FLALKTEDVV CIPKHFIMTR WTKDAVHQKT CNPSLSDQGS  660
GDLKSDLNEL WMEFNGLIKC VGCDNQLIKD LLDFIRNFKS QKLPETTHMS KTDLFEKLIG  720
SPRPSEIVVQ PPQQAKNKGS GKRLKSDREK ITEQAKRHPR KCRVCNRMVN HDNRNCPDKK  780
NKC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-89	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0032s0456.1.p