PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0033s0056.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 212aa    MW: 22297.1 Da    PI: 8.3247
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0033s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36.2e-163411149
                         HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         vtfskR+  +lKKA+ L++LC++e a+++fs+ gk++ +
  Kaladp0033s0056.1.p  3 VTFSKRKSNLLKKANVLCTLCGVECAIVVFSPAGKVFSF 41
                         9***********************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.643145IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-17356IPR002100Transcription factor, MADS-box
PfamPF003191.1E-16341IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-8344IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-8722IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-82243IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MLVTFSKRKS NLLKKANVLC TLCGVECAIV VFSPAGKVFS FGHPSVDQVT DRYLNGILNP  60
TPSPPPPNQV PQNPSEGQHQ AGTDIVQTLS AELSKLTSPL EASKKHGQAL DERRAARMAT  120
NWWERPVADI NNAAQLDALR DAMLNLRGKV YTQAGLRIQA SASSSSVPAA PFAGYNSNPD  180
FTGAGPSTGL LSGGFLGGNY NFGPNEDSPC G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-32AGAMOUS-like 61