PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0033s0140.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 227aa MW: 25651.1 Da PI: 8.8264

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0033s0140.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	216.8	6.8e-67	20	208	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkee....................l 71 + sss+q+Cyv+CnfC+t+lavsvPs slfk+vtvrCGhC++llsvn+ +++++h + ++++ Kaladp0033s0140.1.p 20 HSSSSHQLCYVHCNFCDTVLAVSVPSCSLFKTVTVRCGHCSNLLSVNMGALLvPPQPSSNHQYHPIHNPppslhqeelyvvntvmnnsaA 109 57899**************************************999876634566777655555554799999999888887766663 PP YABBY 72 leelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 +e ++ +e++ + + ++ + ++ ++ e+l++ ++++++ +++PPekrqrvPs ynrfi+eeiqrika+nPdi+hr+afsaaaknWa Kaladp0033s0140.1.p 110 AESEQEREQEHHRKPTMMQIQQPKRVDEMLNTFSKQKTSLFASINKPPEKRQRVPSVYNRFIREEIQRIKAGNPDITHRQAFSAAAKNWA 199 3333333333333333333344444445668888888888899******************************************* PP YABBY 162 hfPkihfgl 170 +fP+ihfgl Kaladp0033s0140.1.p 200 YFPHIHFGL 208 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.5E-66	23	208	IPR006780	YABBY protein
SuperFamily	SSF47095	2.23E-6	151	201	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MSSSSTSSFS PPDHHQTLVH SSSSHQLCYV HCNFCDTVLA VSVPSCSLFK TVTVRCGHCS 60 NLLSVNMGAL LVPPQPSSNH QYHPIHNPPP SLHQEELYVV NTVMNNSAAA ESEQEREQEH 120 HRKPTMMQIQ QPKRVDEMLN TFSKQKTSLF ASINKPPEKR QRVPSVYNRF IREEIQRIKA 180 GNPDITHRQA FSAAAKNWAY FPHIHFGLMP EELHQPVTKK PNLLSR*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269\|PubMed:10457020, ECO:0000269\|PubMed:12417699, ECO:0000269\|PubMed:19837869}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020411971.1	1e-69	axial regulator YABBY 1 isoform X1
Swissprot	Q01JG2	2e-58	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	2e-58	YAB5_ORYSJ; Protein YABBY 5
Swissprot	Q9XFB1	2e-58	YAB3_ARATH; Axial regulator YABBY 3
TrEMBL	A0A251QFS5	2e-68	A0A251QFS5_PRUPE; Uncharacterized protein
STRING	XP_008232594.1	1e-68	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	1e-58	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kaladp0033s0140.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yadav RK, et al. Plant stem cell maintenance involves direct transcriptional repression of differentiation program. Mol. Syst. Biol., 2013. 9: p. 654 [PMID:23549482] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]