PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0033s0140.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family YABBY
Protein Properties Length: 161aa    MW: 18570.1 Da    PI: 10.1569
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0033s0140.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1272.6e-394514271170
                YABBY  71 lleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                            e+++ +e++ k ++++ +  + ++  e+l++ ++++++    +++PPekrqrvPs ynrfi+eeiqrika+nPdi+hr+afsaaaknW
  Kaladp0033s0140.2.p  45 ESEQEREQEHHRKPTMMQIQ--QPKRVDEMLNTFSKQKTSLFASINKPPEKRQRVPSVYNRFIREEIQRIKAGNPDITHRQAFSAAAKNW 132
                          22333333333333333333..3334445677888888888889********************************************** PP

                YABBY 161 ahfPkihfgl 170
                          a+fP+ihfgl
  Kaladp0033s0140.2.p 133 AYFPHIHFGL 142
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-3640142IPR006780YABBY protein
SuperFamilySSF470959.69E-785135IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGALLVPPQP SSNHQYHPIH NPPPSLHQEE LYVVNTVMNN SAAAESEQER EQEHHRKPTM  60
MQIQQPKRVD EMLNTFSKQK TSLFASINKP PEKRQRVPSV YNRFIREEIQ RIKAGNPDIT  120
HRQAFSAAAK NWAYFPHIHF GLMPEELHQP VTKKPNLLSR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315817.15e-36axial regulator YABBY 1-like
RefseqXP_020411971.16e-36axial regulator YABBY 1 isoform X1
TrEMBLA0A251QFS51e-34A0A251QFS5_PRUPE; Uncharacterized protein
TrEMBLD9ZJG41e-34D9ZJG4_MALDO; YABBY domain class transcription factor
STRINGXP_008364377.12e-35(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-35YABBY family protein