PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0033s0140.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 156aa MW: 17878.3 Da PI: 10.6158

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0033s0140.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	132.1	7.3e-41	8	137	37	170
YABBY 37 vrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvP 126 v C h s s + + ++++s+ + +++ + e+++ +e++ k ++++ +++++ + +l++ ++++++ +++PPekrqrvP Kaladp0033s0140.3.p 8 VVCQHGRSSCSSTAI-IKSSVSSHSQ-SSAFTSPESEQEREQEHHRKPTMMQIQQPKRVDE--MLNTFSKQKTSLFASINKPPEKRQRVP 93 556665555552222.2223333333.3345555555556666666666665555554444..577777777787889********** PP YABBY 127 saynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s ynrfi+eeiqrika+nPdi+hr+afsaaaknWa+fP+ihfgl Kaladp0033s0140.3.p 94 SVYNRFIREEIQRIKAGNPDITHRQAFSAAAKNWAYFPHIHFGL 137 ****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.9E-37	28	137	IPR006780	YABBY protein
SuperFamily	SSF47095	9.43E-7	80	130	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MWPLLQSVVC QHGRSSCSST AIIKSSVSSH SQSSAFTSPE SEQEREQEHH RKPTMMQIQQ 60 PKRVDEMLNT FSKQKTSLFA SINKPPEKRQ RVPSVYNRFI REEIQRIKAG NPDITHRQAF 120 SAAAKNWAYF PHIHFGLMPE ELHQPVTKKP NLLSR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022002694.1	2e-35	axial regulator YABBY 1-like
Refseq	XP_027335074.1	2e-35	axial regulator YABBY 1 isoform X1
Refseq	XP_027335075.1	1e-35	axial regulator YABBY 1 isoform X2
TrEMBL	A0A1Q3BV98	1e-35	A0A1Q3BV98_CEPFO; YABBY domain-containing protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-35	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kaladp0033s0140.3.p