PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0033s0178.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 169aa    MW: 19026.3 Da    PI: 6.3517
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0033s0178.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB148.51.4e-461811797
                NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                         mkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plkvyl+kyre+eg+k
  Kaladp0033s0178.1.p  1 MKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVAPLKVYLNKYREIEGDK 81
                         9******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008089.2E-21155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471134.84E-341109IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.0E-441105IPR009072Histone-fold
PRINTSPR006152.7E-191937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.7E-193856No hitNo description
PRINTSPR006152.7E-195775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKKVIPGNGK ISKDAKETVQ ECVSEFISFV TGEASDKCQR EKRKTINGDD VIWAITTLGF  60
EDYVAPLKVY LNKYREIEGD KLNVPNKPRS SDQEQQQLNE QNATTTSSLP YDHTHLPPPP  120
HHSVYSSSNF ITPQTFLTPD QPFPLPFSPT SVQKQIPQEQ RIDSVGHW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-351761893NF-YB
4awl_B3e-351761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-351761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630291.16e-72nuclear transcription factor Y subunit B-3
RefseqXP_023919153.13e-72nuclear transcription factor Y subunit B-7
RefseqXP_027076776.12e-72nuclear transcription factor Y subunit B-7-like
RefseqXP_027179955.12e-72nuclear transcription factor Y subunit B-7
SwissprotQ9SIT92e-58NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A2H5QG317e-73A0A2H5QG31_CITUN; Uncharacterized protein
STRINGAET047672e-71(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.12e-61nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]