PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0033s0238.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 166aa    MW: 19389.2 Da    PI: 10.2626
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0033s0238.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-1321106899
                          -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           d l  ++l++p +f+ ++ +g+   +   tl + s   We  +  ++  +++++++GW++F +++ L   + ++F+++g++ f  +v+v
  Kaladp0033s0238.2.p  21 RDDLHAKNLRVPPQFM-KYlSGD--LTDHATLITHSTACWEAAI--SRAEETIYFKGGWENFFEDHSLGHDELLMFTYKGNMHF--HVRV 103
                          45555566********.555666..44579999***********..**********************************9*99..9999 PP

                          E-S CS
                   B3  97 frk 99 
                          f +
  Kaladp0033s0238.2.p 104 FGR 106
                          876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-1810108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-1913109IPR015300DNA-binding pseudobarrel domain
CDDcd100175.41E-1014104No hitNo description
PROSITE profilePS5086310.6314107IPR003340B3 DNA binding domain
SMARTSM010192.6E-1016107IPR003340B3 DNA binding domain
PfamPF023622.6E-1019105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MATRSRSVNS GKEKSFIAIM RDDLHAKNLR VPPQFMKYLS GDLTDHATLI THSTACWEAA  60
ISRAEETIYF KGGWENFFED HSLGHDELLM FTYKGNMHFH VRVFGRDRCL RTQNARPQIQ  120
RQLPGESFTS SFPHFKICLR KSSFQPFYLL VRFKLRFYTT WGISR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.15e-13B3 family protein