PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0033s0338.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 306aa    MW: 34663.9 Da    PI: 9.6412
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0033s0338.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.79.1e-1436129290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                          fY++YA+  GF+ r +  k+    g i+ +  +C+++gk++++  +       + + r+++++r++C+a++ +k+   g+++  +++ +H
  Kaladp0033s0338.1.p  36 FYKKYARISGFHARCRGDKRC-AGGLIKYKYVYCNRQGKHTKDLIDtldnsnGKFKYRRTNTNRCECQAMVAIKLAAVGVYKYFRFVADH 124
                          9*************9998887.67767777778********9988877776555566688999*************************** PP

                 FAR1  86 nHela 90 
                          n +la
  Kaladp0033s0338.1.p 125 NYSLA 129
                          *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1136129IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGISSSGSMF YTPKCDDSDI PIVGMCFSSV DEGVMFYKKY ARISGFHARC RGDKRCAGGL  60
IKYKYVYCNR QGKHTKDLID TLDNSNGKFK YRRTNTNRCE CQAMVAIKLA AVGVYKYFRF  120
VADHNYSLAD VKCTQFLKSN RSLCFAYQSF IRQCSNLNIG STLAHGLSKE LPGGFSNVGA  180
QKTDYKNFNR DVRAYIRSVD ARMVVNKLLH KLEFCGGHAF DYYVEDGCLL RMFWADLTAR  240
KNYAAFGDVV SFESCMLLGR TIHLQQQAKI HWAKHGDLNS SYFHAALKKR CFTNKICRLK  300
DQAGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-15FAR1-related sequence 5