PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0034s0127.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 343aa MW: 39118.8 Da PI: 7.0059

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0034s0127.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.6	1.6e-13	234	305	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr 71 +W+++e+ +L+ea ++ +l+r++l+ +W+e ++k+ ++ + rs ++C++k++ l+kry+k+k+ ++++ Kaladp0034s0127.1.p 234 EWSEHETFLLLEAWGDRYLQLGRKSLRSDDWKELAEKVsEASEIDRSDVECRNKMDTLKKRYRKEKAKMEQN 305 5***********************************667889********************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.9E-19	234	305	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MYLKSCYEEA QHQTAHSSLL ASPAHLLLLL PPSIFTPETR SSLPNPKIKI SFLFPPKFRS 60 KHTPDLKLQF SLFLNFPLHP SSLDLFFRSL ILMDDSEQNT RYPQMRFPVT SRHQPTYGSQ 120 SSRSLVPVRN QTHLRPVNFT RFKEDYGEDE VDDDEDSYEI EETGYGGMNG GRADFSRGGL 180 EEEEYGNGNR IEFGGGLERN SKKRKMKSVM DYEDGGSANG GGSRELGARN GIREWSEHET 240 FLLLEAWGDR YLQLGRKSLR SDDWKELAEK VSEASEIDRS DVECRNKMDT LKKRYRKEKA 300 KMEQNYTDSM KGAFSRPVCW PSVEAKCAGN YGSPHVNLKN IC*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MYLKSCYEEA QHQTAHSSLL ASPAHLLLLL PPSIFTPETR SSLPNPKIKI SFLFPPKFRS  60
KHTPDLKLQF SLFLNFPLHP SSLDLFFRSL ILMDDSEQNT RYPQMRFPVT SRHQPTYGSQ  120
SSRSLVPVRN QTHLRPVNFT RFKEDYGEDE VDDDEDSYEI EETGYGGMNG GRADFSRGGL  180
EEEEYGNGNR IEFGGGLERN SKKRKMKSVM DYEDGGSANG GGSRELGARN GIREWSEHET  240
FLLLEAWGDR YLQLGRKSLR SDDWKELAEK VSEASEIDRS DVECRNKMDT LKKRYRKEKA  300
KMEQNYTDSM KGAFSRPVCW PSVEAKCAGN YGSPHVNLKN IC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-24	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kaladp0034s0127.1.p