PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0034s0177.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 489aa    MW: 53371.1 Da    PI: 6.4365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0034s0177.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-14327373455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  Er+RR +iN+++  L++l+P +      K++Ka++L +A+eY++ Lq
  Kaladp0034s0177.1.p 327 VHNLTERKRRGKINEKMRALQDLIPYC-----NKVDKAAMLDEAIEYLRVLQ 373
                          5*************************8.....6****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-20320390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-20320386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.015323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-15326377No hitNo description
PfamPF000101.1E-11327373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-16329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSFPEFYCEK MRPNQLKIPR SADKQQTSMP AGNSDYGELV WENGQIVIKG GQSREVSRFP  60
NKGSFINSKT GKSGSRFGFD EVVAGGGEAD SDMLSWFYHL DDTLPHESTS GFSAEIFGVT  120
SDVLPVSHSV NKLSNPVKGS ASFALDSKTE LSDSLSLTYS GXXXXXXXXG RSYSHAKNFP  180
HFSWSAARSK NNLISDGARA SGRFVTRETA AATEEMLVDT NDQTIDVMTK DLPGRPVERP  240
ASAFRAEGGL KVNQVSRNAQ MERMDADMIK KPAAAALPSL CSDNGGVNRL KRKHRDEEDW  300
EDSSEDAEEE SAIIKKVGSK RSRPTEVHNL TERKRRGKIN EKMRALQDLI PYCNKVDKAA  360
MLDEAIEYLR VLQLQVQMMT MRAQMCALPM MAQPGLQHPY TTAPSSQFLP LGMGYQAGAL  420
DMTTGFPAQA ACFPGQFKPP PIFWNAAQGL PTSMPGLLVP MPGAPTTPAP GSADETPNSK  480
DPLHEEAV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.19e-30phytochrome interacting factor 3-like 1