PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0034s0224.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 746aa    MW: 80718.1 Da    PI: 6.3879
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0034s0224.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.67.8e-16447485240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+CnCkkskClk+YCeCfaag++C  +C C++C+Nk 
  Kaladp0034s0224.1.p 447 SCKRCNCKKSKCLKLYCECFAAGVYCIGTCACQNCFNKP 485
                          689**********************************96 PP
2TCR49.49.4e-16532570139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Kaladp0034s0224.1.p 532 RHKRGCNCKKSSCLKKYCECYQGGVGCSVNCRCESCKNV 570
                          589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.4E-16446487IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.889447572IPR005172CRC domain
PfamPF036382.6E-11449484IPR005172CRC domain
SMARTSM011142.5E-15532573IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-11534569IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MDTPERNQIG SSLSKHEDSP VFNYLSNLSP IKPMKSAPIT QTFTTLNFSS LPSIFTSPHV  60
SSHKESRFLL RRHNTPDKSQ SEFSSYIDVS SNKENDVFVD VNQLHNCSSE LQKVSDTLDS  120
VGRAPLEPLH EESDLSIDLS HNLKNDCGSP DSEGKAARDE ASQSAEAATS SVMLDQGPSI  180
SLPAVHETPS GWESLISDGA DLLMFDSPNI AAGLKELFKS PPVEHMGSSF ASQFHQDTPD  240
FLKSDPAFLV DVGELQNETY HHAETEVIDC ARDDFPSTMT GCMTSHPSEN VDDESMMSLH  300
RGVRRRCLVF DTKGAQRKSL IGASSSNPSM CMNDNKKRDA SKIGGSSALC ILPGIGLHLN  360
ALATSGDRGG GQVSVSSSAT TFQSPATAHE SVLDVFSGAS SQENADSGII QCSEDACLAP  420
GLVSLDDINQ NSPRKKRRKP ESSGDESCKR CNCKKSKCLK LYCECFAAGV YCIGTCACQN  480
CFNKPVHEDT VLATRKQIES RNPLAFAPKV IRTSDPLPDI KDEVMNTPAS ARHKRGCNCK  540
KSSCLKKYCE CYQGGVGCSV NCRCESCKNV FGTKDGSAPV AVATQDGDEE EETEKVEMNN  600
KGLQSVMPHN NEEHNPNTFL ATPLRLTRMS MQLPFSSKGK PPRSSFLAVD SASGLQASQK  660
FSKPNYVNPP PKFQRNYPAG QDETEMPEML RNNGSPISAV KTSSPNSKRV SSPHSNFGSS  720
PAPRSTRKLI LQSIPSFPSL TQPAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1645157014121Protein lin-54 homolog
5fd3_B1e-1645157014121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432439PRKKRRKP
2434438KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818657.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X3
TrEMBLA0A2I4EGY10.0A0A2I4EGY1_JUGRE; protein tesmin/TSO1-like CXC 2 isoform X3
STRINGXP_008224266.10.0(Prunus mume)
STRINGVIT_05s0020g03880.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-116TESMIN/TSO1-like CXC 2