PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0034s0229.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 329aa    MW: 38498.6 Da    PI: 4.8999
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0034s0229.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind911.4e-28351342101
                          HHHHHHHHHCTGGGTTTSEESSSS........SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS
         HSF_DNA-bind   2 Flkklyeiledeelkeliswseng........nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 
                          Fl k+y++++d++++++isws+++        +sfv++d+++f++++Lp+yFkh+nf+ F+RQLn YgFkkv+ ++         weF++
  Kaladp0034s0229.1.p  35 FLAKTYHLVDDPTTDQVISWSQDNnnssssssSSFVIWDPRTFSSTILPTYFKHTNFSNFIRQLNSYGFKKVNPDR---------WEFAN 115
                          9********************6555788888889***************************************999.........***** PP

                          SXXXXXXXXXXXX.XXXXX CS
         HSF_DNA-bind  84 ksFkkgkkellek.ikrkk 101
                            F +g+ +l+++ +kr++
  Kaladp0034s0229.1.p 116 AGFIRGHGHLMRTsMKRRA 134
                          ********99976477776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-3326126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-2730128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-4531133IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-2535132IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MNPAREAVPV EEGSASNSDR AQAAERVHES QPPPFLAKTY HLVDDPTTDQ VISWSQDNNN  60
SSSSSSSSFV IWDPRTFSST ILPTYFKHTN FSNFIRQLNS YGFKKVNPDR WEFANAGFIR  120
GHGHLMRTSM KRRARQMQSS DVEPCPKFEE PGFDREVHRL RRDRQILMTE LVKLRQLQKT  180
TRAHIRSMEQ RLRKTELKQQ QTTRFLAKAI RNPDFMQRFS GAKDTREEDE HSFSTEMRST  240
DQEEPGALRG FTEKEIQDYV DISDYEVSDV VVWEKENVLP VAEEGEHDQE QLVGEFLNDW  300
IKEELRQVNV EEEYEDVQAD HLEMICFEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-17813414130Heat shock factor protein 1
5d5v_B4e-17813414130Heat shock factor protein 1
5d5v_D4e-17813414130Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RLRRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364390.13e-83heat stress transcription factor A-6b-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-70heat shock transcription factor A6B