PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0034s0237.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 160aa    MW: 17492.7 Da    PI: 10.4592
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0034s0237.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.8e-153179254
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54
                          ++G+r ++ +gr++AeIrd ++    ++r++lg+f++ e A   ++aa+++l+
  Kaladp0034s0237.1.p 31 NFRGIRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSVEAATTTYDAAARSLR 79
                         69*******.**********883....5**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.40E-173088No hitNo description
PfamPF008476.0E-93079IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-273188IPR001471AP2/ERF domain
SMARTSM003808.4E-293194IPR001471AP2/ERF domain
PROSITE profilePS5103220.4153188IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-183189IPR016177DNA-binding domain
PRINTSPR003678.9E-83243IPR001471AP2/ERF domain
PRINTSPR003678.9E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGKVRGGATG AASLGNQVKD APLEIGSAEP NFRGIRKRPW GRFAAEIRDP WKKTRVWLGT  60
FDSVEAATTT YDAAARSLRC PKARTNFPTP LSSSIVFIFH RVAFEPSSSI VFMFGVVFES  120
SSSSSEPSSN ISKFNSSSSS SRAELELKKN YRAEFEHYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-172588872Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_009770784.14e-29(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-29ERF domain protein 12