PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0036s0173.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 556aa    MW: 60536.4 Da    PI: 8.6587
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0036s0173.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-053860123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k F r  nL+ H r H
  Kaladp0036s0173.3.p 38 FICEVCNKGFQREQNLQLHRRGH 60
                         89*******************88 PP
2zf-C2H2120.00067115137123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Kaladp0036s0173.3.p 115 WKCDKCSKKYAVQSDWKAHSKTC 137
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-63760IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.2E-83760No hitNo description
SMARTSM003550.00523860IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2813861IPR007087Zinc finger, C2H2
PfamPF121712.9E-53860IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
SMARTSM0035519080110IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4103136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.2E-8110135No hitNo description
SMARTSM00355150115135IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MATISDAPST QKKKRTQPDP DAEVIALSPK TLMATNRFIC EVCNKGFQRE QNLQLHRRGH  60
SLPWKLKQKS SKEVARKKVY LCPEPSCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC  120
SKKYAVQSDW KAHSKTCGTK EYRCDCGTLF SRRDSFMTHR AFCEALAQEN AMNPTNLSAI  180
TSQLFGHSLV AANQISPHHQ ELNFHKHSMQ HSDNLPAARS NGDGFRPFGS LLPPLNGSAF  240
RPISTDIVFG SSSYHQDDQD HHSPNKVFMT GMMQQLPQDQ IPSDQTDHSF FSNIASKNDS  300
ENPTNNDSIS ISHLSSSNLF ANRFSTSGGI GGSFNSAQGP TSGLFSGNTI MGDQISPSLY  360
SSAVSLQNSN NASASAHLSA TALLQKAAQV GSSCSINGSS ALLRSLGSSL SGPSSKLDLQ  420
ASPRAIDFKA LLGDKDDKNL HEMISSLGGG GSTTTSSMFG SLAKGLTGYN DEHQENSNSL  480
CSTKLSFGKL LEEEYSKEQP QNVFNDTLTR DFLGVGQIVR QLSGGFSQYD MMQLQQGHQV  540
SSKTSIREGR EFGRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32111171363Zinc finger protein JACKDAW
5b3h_F2e-32111171363Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16477KLKQKSSKEVARKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022735225.11e-141protein indeterminate-domain 5, chloroplastic-like
RefseqXP_022735226.11e-141protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A0D2Q7Q41e-136A0A0D2Q7Q4_GOSRA; Uncharacterized protein
TrEMBLA0A2R6RE721e-136A0A2R6RE72_ACTCH; Protein indeterminate-domain 4 like
STRINGGorai.002G169100.11e-137(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-96indeterminate(ID)-domain 5