PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0036s0258.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 292aa    MW: 32482.9 Da    PI: 8.7685
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0036s0258.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.2e-074083344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +W++eE + + +a + +  +   +W ++a++++ g+t  +++  +
  Kaladp0036s0258.1.p 40 KWSQEENKMFENALAVYDRDspdRWQKVAAMIP-GKTVGDVVKQY 83
                         8*****************99*************.***99998877 PP
2Myb_DNA-binding44.82.9e-14149193347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Kaladp0036s0258.1.p 149 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 193
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.6613691IPR017884SANT domain
SMARTSM007174.8E-73789IPR001005SANT/Myb domain
CDDcd001671.27E-64083No hitNo description
PfamPF002493.7E-64085IPR001005SANT/Myb domain
SuperFamilySSF466892.44E-104093IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-12141198IPR009057Homeodomain-like
PROSITE profilePS5129420.486142198IPR017930Myb domain
SuperFamilySSF466897.48E-17143197IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17145197IPR006447Myb domain, plants
SMARTSM007175.3E-13146196IPR001005SANT/Myb domain
CDDcd001674.05E-11149194No hitNo description
PfamPF002491.0E-12149193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKFEMEIRSP GYGYPENNQQ QNSRQNRKQQ HHQQAESLSK WSQEENKMFE NALAVYDRDS  60
PDRWQKVAAM IPGKTVGDVV KQYEDLEADV SSIEAGLVPV PGYACPAFTL DWVGGDGGGG  120
SKSYDGFSYG YGGGKRLRGV EQERKKGVPW TEEEHKLFLL GLKKYGKGDW RNISRNFVIT  180
RTPTQVASHA QKYFIRQLSG GKEKRRASIH DITTVNLSES QTPLSPDQSA RGQHSPEMPF  240
QWGGSQSSSG HGSSIDFNGV YGFSSNRSAQ GMLGSYMDAY QMQSATQYPQ V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-15411031173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3621841e-42AK362184.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003C15.
GenBankAK3631921e-42AK363192.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278855.11e-109transcription factor DIVARICATA
SwissprotQ8S9H75e-99DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A061GWE31e-106A0A061GWE3_THECC; DIV1A protein
STRINGEOY338011e-107(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-78Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]