PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0037s0104.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 101aa MW: 11266.7 Da PI: 9.6587

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0037s0104.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.2	1.7e-14	4	62	35	97
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++l+ +s+++W+v ++ + ++ ++GW eFv+++ L+e f+vF+++g+s+f +v +f Kaladp0037s0104.1.p 4 RIRLKGPSSNKWKVGS--ERAEKDVIVGRGWAEFVSDQSLDESNFLVFHYTGDSSF--KVLIF 62 599***********..*********************************999..66655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.746	1	65	IPR003340	B3 DNA binding domain
CDD	cd10017	2.99E-9	2	62	No hit	No description
SuperFamily	SSF101936	8.44E-14	2	70	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.6E-14	3	67	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.8E-11	4	61	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MGNRIRLKGP SSNKWKVGSE RAEKDVIVGR GWAEFVSDQS LDESNFLVFH YTGDSSFKVL 60 IFYLSGCEKE SSHFVKPTDR SSSVRALLLT PTDIKNQNPK *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017969605.1	3e-18	PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBL	A0A061DGN9	2e-16	A0A061DGN9_THECC; Thioredoxin superfamily protein isoform 2
STRING	EOX91266	5e-17	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	7e-13	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0037s0104.1.p