PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0037s0272.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 435aa    MW: 49152.5 Da    PI: 6.0429
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0037s0272.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.42.9e-21115211185
             trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                          +Wt++ v++Li a+  ++++ + +            +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++ +++++++
  Kaladp0037s0272.1.p 115 KWTDNVVRLLISAVACVGDDGSLDGveglrrksgilQKKGKWKTVSKIMISKGCSVSPQQCEDKFNDLNKRYKRLNEILGRGtSCRVVEN 204
                          7**************777777754334445556788**********************************************66999999 PP

             trihelix  79 cpyfdql 85 
                           ++ d++
  Kaladp0037s0272.1.p 205 PALMDSM 211
                          9888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-19113238No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDNSGLGCGF LSGLNGVMLD LESPINKNQQ VQMDPSLMNH QHHVDKISGL GLGHHSMGLF  60
ESRNCNSNGI SMNFGKGKAI AVTSNENTSD DDEDLDGDNC HGPNEKRRSP WHRMKWTDNV  120
VRLLISAVAC VGDDGSLDGV EGLRRKSGIL QKKGKWKTVS KIMISKGCSV SPQQCEDKFN  180
DLNKRYKRLN EILGRGTSCR VVENPALMDS MPNLSSKMKD VVRKILCSKH LFYQEMCAYH  240
NGQRIPNCHD LDLQGLSVPL ARSTLDHHGP EEEEPDEDDD PDDNDLDNND HDIAADDSAR  300
VRKKKSPNED NDNLLSHSGA LEEIEAEMAA IVEDPTKTLV DKRECIKKRM LLLLEHRVNI  360
QAEALEIESR HFKWLRYRHK KDGEFMKLKL ENERQKLEYE RMELLIHEKQ LELESKKPQE  420
GEACVGLEIL SVRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592582.11e-162uncharacterized protein LOC110600136
RefseqXP_021592583.11e-162uncharacterized protein LOC110600136
RefseqXP_021592584.11e-162uncharacterized protein LOC110600136
TrEMBLA0A251J8091e-161A0A251J809_MANES; Uncharacterized protein
STRINGcassava4.1_007480m1e-162(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-62sequence-specific DNA binding transcription factors