PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0037s0341.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

AP2

Protein Properties

Length: 66aa MW: 7615.68 Da PI: 11.5459

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0037s0341.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.9	1.6e-10	25	59	1	38
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 s+y+GV +++ +grW+A+I + +k+ +lg+fg Kaladp0037s0341.1.p 25 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFGK 59 89**99******988422...5*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.7E-6	25	59	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-6	25	59	IPR016177	DNA-binding domain
PROSITE profile	PS51032	8.742	26	57	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.7E-6	26	58	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MEAQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVLGNK YLYLGTFGKF 60 SFFFK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027174086.1	3e-34	AP2-like ethylene-responsive transcription factor At1g79700
Swissprot	Q94AN4	7e-32	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	A0A0D2RRR1	5e-33	A0A0D2RRR1_GOSRA; Uncharacterized protein
TrEMBL	A0A392MZ50	2e-33	A0A392MZ50_9FABA; AP2 domain-containing transcription factor (Fragment)
STRING	PGSC0003DMT400087745	5e-33	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.2	7e-36	ARIA-interacting double AP2 domain protein

Link Out ? help Back to Top
Phytozome	Kaladp0037s0341.1.p

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]