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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Kaladp0037s0405.2.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 253aa MW: 28460.5 Da PI: 5.9616 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 34.1 | 6.4e-11 | 2 | 36 | 12 | 48 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
++++ ++lG++ W++Ia++++ Rt++++k++w+++l
Kaladp0037s0405.2.p 2 IIHLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 36
5788899****.*********.************996 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00717 | 0.0017 | 1 | 38 | IPR001005 | SANT/Myb domain |
| PROSITE profile | PS51294 | 19.876 | 1 | 40 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.4E-15 | 1 | 37 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 1.97E-7 | 1 | 36 | No hit | No description |
| Pfam | PF00249 | 1.3E-9 | 2 | 36 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 1.56E-9 | 2 | 46 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 253 aa Download sequence Send to blast |
MIIHLQALLG NKWAAIASYL PERTDNDIKN YWNTHLKKKL DNRYQQTMEQ PHHHYLINSS 60 QQLHHPSNNM GAASSSTSSS NNGVITCVHN NDSPSPLLHA TTNSSSLTSS SHYASSTENI 120 SRLLEGWMRT SPKTNNKQLI IRSSRSEHES SCEDLIVVGM EEDEAVVVPN KDDDTAGHEM 180 TMWGKGRNEC FDKEMMMMMM KQQLDEEGGN DSSHGHQRHN NPPFSIFEKW LFEETSNSGG 240 GQVEEMQLSP IF* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G08810.1 | 6e-24 | myb domain protein 60 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Kaladp0037s0405.2.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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