PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0037s0437.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 247aa MW: 27680.3 Da PI: 9.1289

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0037s0437.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.5	1.1e-25	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien++nrqvtfskRrng+ KKA+ELSvLCd++ a+i+fs++g+ Kaladp0037s0437.1.p 9 KKIENTTNRQVTFSKRRNGLVKKAYELSVLCDIDLALIMFSPSGR 53 68****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.7E-35	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.315	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.8E-29	2	79	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.98E-36	2	76	No hit	No description
PRINTS	PR00404	4.3E-24	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.9E-25	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-24	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-24	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGRVKLEIKK IENTTNRQVT FSKRRNGLVK KAYELSVLCD IDLALIMFSP SGRPSLFSGK 60 KSSFEQILNR YTSLPEHERG RIFEGNPSDI TTLAEVNYNE KILEDTLKRV RMRKVQVAQD 120 FMLVNDGHGV SWTPNMYSLD SLGMQVQRRT PQLQILNFIG SGCLPPASRS ELRRSIEMSP 180 QHQTSNLISL HNLQGSHEHS LSPSSGTEIE NNNINQAASH YNGCGAQPFD VNISPWTQFY 240 TPATGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	5e-18	1	78	1	77	Myocyte-specific enhancer factor 2B
1tqe_Q	5e-18	1	78	1	77	Myocyte-specific enhancer factor 2B
1tqe_R	5e-18	1	78	1	77	Myocyte-specific enhancer factor 2B
1tqe_S	5e-18	1	78	1	77	Myocyte-specific enhancer factor 2B
6byy_A	6e-18	1	78	1	77	MEF2 CHIMERA
6byy_B	6e-18	1	78	1	77	MEF2 CHIMERA
6byy_C	6e-18	1	78	1	77	MEF2 CHIMERA
6byy_D	6e-18	1	78	1	77	MEF2 CHIMERA
6bz1_A	6e-18	1	78	1	77	MEF2 CHIMERA
6bz1_B	6e-18	1	78	1	77	MEF2 CHIMERA
6bz1_C	6e-18	1	78	1	77	MEF2 CHIMERA
6bz1_D	6e-18	1	78	1	77	MEF2 CHIMERA
6c9l_A	5e-18	1	78	1	77	Myocyte-specific enhancer factor 2B
6c9l_B	5e-18	1	78	1	77	Myocyte-specific enhancer factor 2B
6c9l_C	5e-18	1	78	1	77	Myocyte-specific enhancer factor 2B
6c9l_D	5e-18	1	78	1	77	Myocyte-specific enhancer factor 2B
6c9l_E	5e-18	1	78	1	77	Myocyte-specific enhancer factor 2B
6c9l_F	5e-18	1	78	1	77	Myocyte-specific enhancer factor 2B
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015572503.1	3e-54	agamous-like MADS-box protein AGL104 isoform X1
TrEMBL	A5BY19	3e-65	A5BY19_VITVI; Uncharacterized protein
STRING	XP_010105468.1	4e-65	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	5e-36	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Kaladp0037s0437.1.p