PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0038s0084.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family DBB
Protein Properties Length: 277aa    MW: 29602.5 Da    PI: 7.8659
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0038s0084.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.9e-06444540
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.....Htvv 40
                          C+ +e  e++l C  ++  lC+ C +++H +     H++v
  Kaladp0038s0084.1.p  4 LCSACELAEAELICCADEAVLCRGCDEKIHVNklaqmHQRV 44
                         7******99*********************77788888865 PP
2zf-B_box25.72.3e-085192237
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         + +kC+ ++e    +fC +++ llC+ C  + Hk       H
  Kaladp0038s0084.1.p 51 SSPKCDICQEAVGYFFCAEDRALLCQGCDASVHKMndsvsaH 92
                         5689*******9*********************645555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.8E-8146IPR000315B-box-type zinc finger
PROSITE profilePS501199.727146IPR000315B-box-type zinc finger
CDDcd000215.40E-5344No hitNo description
SMARTSM003367.1E-125097IPR000315B-box-type zinc finger
PROSITE profilePS501199.1435097IPR000315B-box-type zinc finger
PfamPF006434.2E-75292IPR000315B-box-type zinc finger
CDDcd000214.85E-95397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKVLCSACEL AEAELICCAD EAVLCRGCDE KIHVNKLAQM HQRVYLSAPS SSPKCDICQE  60
AVGYFFCAED RALLCQGCDA SVHKMNDSVS AHQRFLLPGV RVGAHSAQLS ASSAAGFAER  120
SNLGTEISKP ITKPVSKSAG KASGGSRARR TAEAGAYSAG NGSSSPWLPN ELFSLTSVSH  180
GIYHKAHAHR PTKTGGEKLA DLELDEILGQ VGQFPESSWM VPEIPNPRPA LGICWPENHN  240
DQAAFVPEIL SSFSSKFKNH QAQQSGPLTA KRRRLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270274KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-43light-regulated zinc finger protein 1