PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0023.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 392aa    MW: 43945.4 Da    PI: 7.7199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.3e-1868115148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd++l ++++ +G+g+W+t ++  g+ R++k+c++rw +yl
  Kaladp0039s0023.1.p  68 KGPWTPEEDQKLTHYIQIHGPGNWRTLPKNAGLERCGKSCRLRWTNYL 115
                          79********************************************97 PP
2Myb_DNA-binding53.17.5e-17121165147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rgr++ eE+e +++++  lG++ W++Ia +++ gRt++++k++w+++
  Kaladp0039s0023.1.p 121 RGRFSFEEEEAIIQLHSVLGNK-WSAIATRLP-GRTDNEIKNYWNTH 165
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-2460118IPR009057Homeodomain-like
PROSITE profilePS5129418.30463115IPR017930Myb domain
SuperFamilySSF466895.87E-3165162IPR009057Homeodomain-like
SMARTSM007179.1E-1567117IPR001005SANT/Myb domain
PfamPF002495.9E-1668115IPR001005SANT/Myb domain
CDDcd001674.07E-1270115No hitNo description
PROSITE profilePS5129425.547116170IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-26119170IPR009057Homeodomain-like
SMARTSM007173.5E-16120168IPR001005SANT/Myb domain
PfamPF002495.2E-15121165IPR001005SANT/Myb domain
CDDcd001674.28E-12123166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MQPFNPSRVY IDTNTKLLFQ AQTASPSSYF LHNGSDLNSA INNLQTYCCK EIIMGRAPCC  60
EKSNGLKKGP WTPEEDQKLT HYIQIHGPGN WRTLPKNAGL ERCGKSCRLR WTNYLRPDIK  120
RGRFSFEEEE AIIQLHSVLG NKWSAIATRL PGRTDNEIKN YWNTHIRKRL LRSGIDPVTH  180
TPRIDLFREL TTLLKLNHPA LCNQNALLNL SNLLSLNQQT VNPQLVNIAT SLLTLKQPQE  240
STAFLQPNIF QNPNMAQFQQ FPSYPSTVNY AQQLMQGGDI NTNIPGAVDI SSKVGSFKSS  300
PMSSQDTGSP LDLEGHFGSG LMSNNYGCQP NLSSNSSFQS SLDNSNQQKQ YSLDSILSTP  360
NNQSTEEERD AYCSNLFNFE IPEGLDMSYL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-30661702105C-Myb DNA-Binding Domain
1msf_C1e-30661702105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095853.11e-109transcription factor MYB102
SwissprotQ9LDR84e-92MY102_ARATH; Transcription factor MYB102
TrEMBLW9R0B61e-108W9R0B6_9ROSA; Transcription factor
STRINGXP_010095853.11e-109(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.17e-88MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]