PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0249.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 171aa    MW: 18518.1 Da    PI: 9.9736
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0249.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.33e-211665255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g
  Kaladp0039s0249.1.p 16 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDTAARSLRG 65
                         69*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.1171673IPR001471AP2/ERF domain
PfamPF008478.6E-141665IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-231674IPR016177DNA-binding domain
CDDcd000181.53E-281672No hitNo description
SMARTSM003806.3E-401679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-321673IPR001471AP2/ERF domain
PRINTSPR003674.9E-111728IPR001471AP2/ERF domain
PRINTSPR003674.9E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSAAAGGGGG GGGEGHYRGV RKRPWGRYAA EIRDPWKKTR VWLGTFDTPE EAALAYDTAA  60
RSLRGPKAKT NFPPQPPPSS PPPPPLSLDL NPPRWAALVH HRPQPLSFSE FLRTDALAPR  120
CCPDPLPSDS ASFPSGFPPM QRLQALELFR DAKPPRGLAI DLNEPPPLWM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-23680479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449387.16e-49ethylene-responsive transcription factor 12
RefseqXP_006467752.16e-49ethylene-responsive transcription factor 12
SwissprotQ94ID61e-39ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A067GG801e-47A0A067GG80_CITSI; Uncharacterized protein
TrEMBLB8YM261e-47B8YM26_CITUN; Putative ethylene responsive element binding protein 1
TrEMBLV4U9J01e-47V4U9J0_9ROSI; Uncharacterized protein
STRINGXP_006467752.12e-48(Citrus sinensis)
STRINGXP_006449387.12e-48(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-37ERF domain protein 12