PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0250.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 204aa    MW: 22376.3 Da    PI: 9.9031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.9e-211160255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Kaladp0039s0250.1.p 11 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 60
                         69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-221168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-321169IPR001471AP2/ERF domain
CDDcd000181.86E-191168No hitNo description
SMARTSM003801.2E-391174IPR001471AP2/ERF domain
PROSITE profilePS5103223.9331168IPR001471AP2/ERF domain
PfamPF008473.5E-141160IPR001471AP2/ERF domain
PRINTSPR003673.8E-111223IPR001471AP2/ERF domain
PRINTSPR003673.8E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAEDKEAREV HFRGVRKRPW GRYAAEIRDP GKKSRVWLGT FDTAEEAARA YDAAAREFRG  60
TKAKTNFPSP HEPKFVTIPT VAQFKLDRSP SQSSTVESSS PPLDLQLGLL VSPVSLGFQP  120
LSPPYTHTHH HQSKANNFFL DAALGSKNSS NPLLIRPKAS YIQAKPFHFE APASDSDSSS  180
AVIDVTLKRA ILGIDLNLLP TEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21768163ATERF1
3gcc_A3e-21768163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ84XB13e-44Q84XB1_SOLLC; Ethylene response factor 3
STRINGSolyc10g009110.1.17e-45(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-26ERF domain protein 12