PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0346.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 215aa    MW: 24318.5 Da    PI: 8.8076
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0346.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.37e-5451291127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv++yL++k+++  +++ ++i+ vd++k+ePwdLp  ++ +e+ewyfF  +d+ky+tg r+nrat++gyWk+tgkdk
  Kaladp0039s0346.1.p   5 LPPGFRFHPTDEELVTYYLNNKIADCGFTC-RAITAVDLNKCEPWDLPVLASMGEREWYFFNLKDRKYPTGLRTNRATQAGYWKTTGKDK 93 
                          79**************************99.89***************8777899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          e+++ +g  vglkktLvfy+grapkgek++Wvmheyr
  Kaladp0039s0346.1.p  94 EIYK-DGVIVGLKKTLVFYRGRAPKGEKSNWVMHEYR 129
                          ***9.99*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-623151IPR003441NAC domain
PROSITE profilePS5100557.4785151IPR003441NAC domain
PfamPF023652.4E-286129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEEYLPPGFR FHPTDEELVT YYLNNKIADC GFTCRAITAV DLNKCEPWDL PVLASMGERE  60
WYFFNLKDRK YPTGLRTNRA TQAGYWKTTG KDKEIYKDGV IVGLKKTLVF YRGRAPKGEK  120
SNWVMHEYRP EAKPTFKSNK DEWVVCRVFK KSSSTAKKPP HTPSSSSQQY TALDDSSNIV  180
THDLGETIEI PNHSVPNGGQ PGLTTAVLTI NYPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-55515717171NO APICAL MERISTEM PROTEIN
1ut4_B5e-55515717171NO APICAL MERISTEM PROTEIN
1ut7_A5e-55515717171NO APICAL MERISTEM PROTEIN
1ut7_B5e-55515717171NO APICAL MERISTEM PROTEIN
3swm_A5e-55515720174NAC domain-containing protein 19
3swm_B5e-55515720174NAC domain-containing protein 19
3swm_C5e-55515720174NAC domain-containing protein 19
3swm_D5e-55515720174NAC domain-containing protein 19
3swp_A5e-55515720174NAC domain-containing protein 19
3swp_B5e-55515720174NAC domain-containing protein 19
3swp_C5e-55515720174NAC domain-containing protein 19
3swp_D5e-55515720174NAC domain-containing protein 19
4dul_A5e-55515717171NAC domain-containing protein 19
4dul_B5e-55515717171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440976.12e-97NAC domain-containing protein 92
SwissprotQ9FLJ22e-77NC100_ARATH; NAC domain-containing protein 100
TrEMBLV4TWF04e-96V4TWF0_9ROSI; Uncharacterized protein
STRINGXP_006440976.17e-97(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.17e-93NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]