PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0361.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 265aa    MW: 29129.6 Da    PI: 7.1474
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0361.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-09655346
                         SS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqk 46
                         +WT +Ed+ + da++ +  +       +W++Ia  ++ +++  q+k++++ 
  Kaladp0039s0361.1.p  6 SWTIDEDKAFEDAIATHWIEnledsdeHWEKIAVAVP-TKSIHQLKHHYRL 55
                         7*****************99*****************.***********96 PP
2Myb_DNA-binding39.21.6e-12123167347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Kaladp0039s0361.1.p 123 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 167
                          7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.711261IPR017884SANT domain
SMARTSM007172.6E-4359IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-7564IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-4557IPR009057Homeodomain-like
PfamPF002493.0E-6655IPR001005SANT/Myb domain
CDDcd001671.58E-6657No hitNo description
PROSITE profilePS5129418.034116172IPR017930Myb domain
SuperFamilySSF466897.18E-17118173IPR009057Homeodomain-like
SMARTSM007172.3E-10120170IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.4E-17120170IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.3E-11121166IPR009057Homeodomain-like
PfamPF002496.1E-11123167IPR001005SANT/Myb domain
CDDcd001677.19E-10123168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSSSSSWTID EDKAFEDAIA THWIENLEDS DEHWEKIAVA VPTKSIHQLK HHYRLLVDDV  60
KDIDAGIIPL PEYVGDDNWP SSSSKKTAAF ADNISKKSNG NFPGNESNGK AGRSEQERRK  120
GIPWTEEEHR LFLLGLDKFG KGDWRSISRN FVISRTPTQV ASHAQKYFIR LSSMNRDRRR  180
SSIHDITSVN NGDISTHEPP ITGQPGSTNP NVGGIVKGMY GGPVGQVVGA PVGHVAAVGT  240
PVMMPPYVVP VPYPVTPQRM HQQS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021983810.11e-110transcription factor MYBS1
SwissprotQ9FNN67e-78SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A251TYS31e-109A0A251TYS3_HELAN; Putative duplicated homeodomain-like superfamily protein
STRINGXP_002511974.11e-107(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-66MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]