PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0445.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

BBR-BPC

Protein Properties

Length: 100aa MW: 11037.8 Da PI: 8.9444

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0445.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	156	6.6e-48	6	98	194	286
GAGA_bind 194 idlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283 +l+ln+ +lD+ +lPvP sCtG++r CYkWGnGGWqSa Ctt++S+yP+P ++++r++R+ g KmS++af+k +La++Gyd+ p+ Kaladp0039s0445.1.p 6 GELSLNELNLDDVNLPVPFYSCTGKPRSCYKWGNGGWQSARCTTALSMYPMPLMPNKRHSRMDGCKMSGNAFTKPTTRLATDGYDITVPI 95 5899************************************************************************************ PP GAGA_bind 284 DLk 286 D+k Kaladp0039s0445.1.p 96 DMK 98 9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	7.6E-7	1	99	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	7.6E-44	6	99	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MVEAKGELSL NELNLDDVNL PVPFYSCTGK PRSCYKWGNG GWQSARCTTA LSMYPMPLMP 60 NKRHSRMDGC KMSGNAFTKP TTRLATDGYD ITVPIDMKK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008365907.1	3e-38	protein BASIC PENTACYSTEINE4-like isoform X4
Refseq	XP_009378464.1	3e-38	PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X4
Refseq	XP_021806325.1	3e-38	protein BASIC PENTACYSTEINE4 isoform X2
Swissprot	Q5VSA8	2e-37	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A3S3MKL4	1e-37	A0A3S3MKL4_9MAGN; Barley B recombinant-like protein D isoform X1
STRING	XP_008236825.1	3e-37	(Prunus mume)
STRING	EMJ02466	3e-37	(Prunus persica)
STRING	GSMUA_Achr1P03770_001	1e-37	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	4e-39	basic pentacysteine 4

Link Out ? help Back to Top
Phytozome	Kaladp0039s0445.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]