PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0496.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 439aa    MW: 47763.3 Da    PI: 5.9958
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0496.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.51.5e-091760340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         +r C+ + +k+++++C  ++ +lC++C ++ H+       H++v
  Kaladp0039s0496.1.p 17 ARACDSCIRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 60
                         578*****************************667888888876 PP
2CCT67.44e-23379421143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+
  Kaladp0039s0496.1.p 379 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 421
                          9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.3E-111562IPR000315B-box-type zinc finger
PROSITE profilePS5011911.0491562IPR000315B-box-type zinc finger
PfamPF006437.7E-81760IPR000315B-box-type zinc finger
CDDcd000218.24E-101862No hitNo description
PROSITE profilePS5101716.083379421IPR010402CCT domain
PfamPF062036.6E-18379421IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MTPDVKKVAN VVGGKTARAC DSCIRKRARW YCAADDAFLC QSCDSSVHSA NPLARRHERV  60
RLKTASFASV HGESGGHNKS SNRVPTWHSR KPRTPRGKKG GSFRSPKSDE VVRNPFYLVP  120
EAMSDDTTSF DESDGQLLFG RVPVFDSFAA ELCSPPHEAD AMEAFTDTGP ENVKASGGQR  180
REDFDEMKGF VGNFCNDLGF LPSEKDLEEF AADVEKLLGT GLDDESFGID GLGLVGCNVD  240
VEGSFNCSVR GGGGGRVKDE EEEAEEIDMT REPFVLSFDY DEEGNGASEA AEGGAVGGGD  300
VDVKVAKKMK ILLKLDYEGI VSAWDGSSPW TTGTRPEVDP NDCWPTCMGA CGIESHLQRL  360
GDPATGVNGR MGMLGDGGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK  420
RCSSSFPAGS SNNVSLFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389405RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282578.11e-145PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLD7T9491e-144D7T949_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03520.t011e-145(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.18e-90B-box type zinc finger protein with CCT domain