PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0564.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 1426aa MW: 158216 Da PI: 6.8866

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0564.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	1390	1416	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H Kaladp0039s0564.1.p 1390 YKCKaeGCGVSFRFISDFSRHRRKtgH 1416 99*********************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	3.7E-14	15	56	IPR003349	JmjN domain
PROSITE profile	PS51183	13.619	16	57	IPR003349	JmjN domain
Pfam	PF02375	1.7E-14	17	50	IPR003349	JmjN domain
SuperFamily	SSF51197	1.73E-26	257	446	No hit	No description
SMART	SM00558	1.4E-43	281	450	IPR003347	JmjC domain
PROSITE profile	PS51184	33.823	281	450	IPR003347	JmjC domain
Pfam	PF02373	2.2E-35	314	433	IPR003347	JmjC domain
PROSITE pattern	PS00028	0	1309	1333	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.74E-7	1318	1367	No hit	No description
SMART	SM00355	0.32	1330	1354	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.778	1330	1359	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1332	1354	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.6E-6	1337	1360	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.002	1360	1384	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.196	1360	1389	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.7E-10	1361	1384	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	1362	1384	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.28E-10	1370	1416	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.3E-10	1385	1413	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	1.5	1390	1416	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.637	1390	1421	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1392	1416	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009741	Biological Process	response to brassinosteroid
GO:0009826	Biological Process	unidimensional cell growth
GO:0033169	Biological Process	histone H3-K9 demethylation
GO:0048577	Biological Process	negative regulation of short-day photoperiodism, flowering
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1426 aa Download sequence Send to blast
MRDVEVPHWL IKLPLAPEFR PTDTEFADPI AYISKIENEA RAFGICKIIP PLPRPSKKYV 60 FSNLNRSLLK SPELGSDATA VKSCSGVNEG EVRAVFTTRQ QELGHTEKKD KAAIHMGQGA 120 VNKQVWQSGE LYTLDQFESK AKAFYRSTLG MVKDISPLAI EALFWKADSE NHVYVEYAND 180 VPGSGFGEPS GNGSFQHFHK RRRKRVFRRT TESSRKKYEV CGANESHADI QENNLSSETS 240 NVIVKVNTHV DAPVSSDKTA SVYHQDKSDS TTDIEGTAGW KLSNCPWNLQ VIARSPGSLT 300 RFMPDDIPGV TSPMVYIGML FSWFAWHVED HELHSLNFLH TGSSKTWYSV PGDYAFAFEE 360 VIRTRAYGEN VDRLAALMML GEKTTLLSPE VVVASGIPCC RLVQNPGEFV VTFPRAYHVG 420 FSHGFNCGEA ANFGTPQWLK VAKEAAVRRA AMNFLPMLSH QQLLYLLAMS FLTRVPRALL 480 VGARSSRLRD RMKEERELSV KKAFIEDILN EDKLLSVLRG AKSTYRAVLW DPESLPSLSK 540 EPSLLSKMEN TAANASDSSN SCVFQSNHNL LDEMRFYTET MKDDYVDDDG FLSDFQVDYG 600 AVACVACGIL GFPFMTVVQP SEAASLHLRP LVENKSVAQD ISCLDLDVSI DHSVSVLSTP 660 VVSSNMKVNK DQNASHRFFR PRVFCLEHAV QVIELLESKG GAEVLVICHS DFQKIKSQAA 720 AVAGELGSQY NYDMVPLDCA SLEDLNLIDL AVDEDREESD EDWSSVLGIN LRCCIKMRKN 780 SSSKHVDLAL KLFGLPSNIT LGSSLSHLKW QHTRSRSKTP VLHDSKQVSK LLSNRIKKEK 840 KIIQYKRRKS KPKSFGSAPV RNTSLDCEEN SASVSSDTDI AGINMSELDN SVNINKSPAS 900 MTELNQVEGS LVTPCPSLEI MHSDIVDQLE ESGSVRCVCV STSVDVVGVD NGVHDTRYKG 960 ETSLNCAVEH SSCADSPVRM EGMSASENNG QIRSTDTTNI KDTIEHEIAI HVDGKNVLTS 1020 MEPDLVAGGI PSAANPMLGK THMDNFTEWE VKDEVCAVIP HNERSNEGSP SLLSQSLTQM 1080 SAFEGSSTLL PLASCSTEEY VLVKDTQSSK VADTPGTEEN LCSASLDKLR DNSINAEPAY 1140 LVSIETSVGD DSSYEVVQIR TLKGVDDKED PNNCRLTDFN QVSLMSAGDE SAAAKYMGAS 1200 KNLYDVKTGE TENNRVKPKP SNRNARKRNR ELEKLRDNKN EVADFIRSPC EGLRPRSKIA 1260 SSSHNIDVRH SYTEEPAIAK KKLKHIPADT STSTPNKTGK QESKGWHRCD LECCILSFKT 1320 KAKLLLHQQN QCHIQGCGKK FSCHRYLIVH QRVHVDDRPL KCSWKGCNMS FKWAWARTEH 1380 LRVHTGERPY KCKAEGCGVS FRFISDFSRH RRKTGHGGDT HSPLG*

Sequence ? help Back to Top

Protein Sequence Length: 1426 aa Download sequence Send to blast

MRDVEVPHWL IKLPLAPEFR PTDTEFADPI AYISKIENEA RAFGICKIIP PLPRPSKKYV  60
FSNLNRSLLK SPELGSDATA VKSCSGVNEG EVRAVFTTRQ QELGHTEKKD KAAIHMGQGA  120
VNKQVWQSGE LYTLDQFESK AKAFYRSTLG MVKDISPLAI EALFWKADSE NHVYVEYAND  180
VPGSGFGEPS GNGSFQHFHK RRRKRVFRRT TESSRKKYEV CGANESHADI QENNLSSETS  240
NVIVKVNTHV DAPVSSDKTA SVYHQDKSDS TTDIEGTAGW KLSNCPWNLQ VIARSPGSLT  300
RFMPDDIPGV TSPMVYIGML FSWFAWHVED HELHSLNFLH TGSSKTWYSV PGDYAFAFEE  360
VIRTRAYGEN VDRLAALMML GEKTTLLSPE VVVASGIPCC RLVQNPGEFV VTFPRAYHVG  420
FSHGFNCGEA ANFGTPQWLK VAKEAAVRRA AMNFLPMLSH QQLLYLLAMS FLTRVPRALL  480
VGARSSRLRD RMKEERELSV KKAFIEDILN EDKLLSVLRG AKSTYRAVLW DPESLPSLSK  540
EPSLLSKMEN TAANASDSSN SCVFQSNHNL LDEMRFYTET MKDDYVDDDG FLSDFQVDYG  600
AVACVACGIL GFPFMTVVQP SEAASLHLRP LVENKSVAQD ISCLDLDVSI DHSVSVLSTP  660
VVSSNMKVNK DQNASHRFFR PRVFCLEHAV QVIELLESKG GAEVLVICHS DFQKIKSQAA  720
AVAGELGSQY NYDMVPLDCA SLEDLNLIDL AVDEDREESD EDWSSVLGIN LRCCIKMRKN  780
SSSKHVDLAL KLFGLPSNIT LGSSLSHLKW QHTRSRSKTP VLHDSKQVSK LLSNRIKKEK  840
KIIQYKRRKS KPKSFGSAPV RNTSLDCEEN SASVSSDTDI AGINMSELDN SVNINKSPAS  900
MTELNQVEGS LVTPCPSLEI MHSDIVDQLE ESGSVRCVCV STSVDVVGVD NGVHDTRYKG  960
ETSLNCAVEH SSCADSPVRM EGMSASENNG QIRSTDTTNI KDTIEHEIAI HVDGKNVLTS  1020
MEPDLVAGGI PSAANPMLGK THMDNFTEWE VKDEVCAVIP HNERSNEGSP SLLSQSLTQM  1080
SAFEGSSTLL PLASCSTEEY VLVKDTQSSK VADTPGTEEN LCSASLDKLR DNSINAEPAY  1140
LVSIETSVGD DSSYEVVQIR TLKGVDDKED PNNCRLTDFN QVSLMSAGDE SAAAKYMGAS  1200
KNLYDVKTGE TENNRVKPKP SNRNARKRNR ELEKLRDNKN EVADFIRSPC EGLRPRSKIA  1260
SSSHNIDVRH SYTEEPAIAK KKLKHIPADT STSTPNKTGK QESKGWHRCD LECCILSFKT  1320
KAKLLLHQQN QCHIQGCGKK FSCHRYLIVH QRVHVDDRPL KCSWKGCNMS FKWAWARTEH  1380
LRVHTGERPY KCKAEGCGVS FRFISDFSRH RRKTGHGGDT HSPLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ip0_A	2e-55	273	469	146	351	Transcription factor jumonji (Jmj) family protein
6ip4_A	2e-55	273	469	146	351	Arabidopsis JMJ13
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269\|PubMed:15377760, ECO:0000269\|PubMed:18467490, ECO:0000269\|PubMed:19946624}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008233302.1	0.0	PREDICTED: probable lysine-specific demethylase ELF6
Swissprot	Q6BDA0	0.0	ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBL	A0A2N9ER00	0.0	A0A2N9ER00_FAGSY; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0039s0564.1.p

Publications ? help Back to Top
Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A. PLoS ONE, 2013. 8(7): p. e67987 [PMID:23976921] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Crevillén P, et al. Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state. Nature, 2014. 515(7528): p. 587-90 [PMID:25219852] Yang H,Howard M,Dean C Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74 [PMID:27482092]